Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyocaulus_20viviparus_20[genbank_20GCA_5F000816705.1_202015-03- 12] 7,157 sequences; 160,963,781 total letters Query= NC_008293.1 Length=135454 Score E Sequences producing significant alignments: (Bits) Value seq9 104 2e-17 seq143 86.0 5e-12 >seq9 Length=784367 Score = 104 bits (114), Expect = 2e-17 Identities = 109/141 (77%), Gaps = 2/141 (1%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || ||||| || || ||||| |||||| | ||||| | |||||||| | || Sbjct 113698 ATGCAGATTTTTGTCAAAACCTTGACTGGTAAAACTATCACTCTTGAAGTGGAAGCTTCA 113757 Query 25059 GACACTATCGAGTCACTGAA-GCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCA 25117 ||||| || ||| |||| ||||||| ||| ||||||||||| || ||||| || || Sbjct 113758 GACACAATTGAGAATGTGAAAGCAAAAATTCAA-GACAAAGAAGGAATCCCACCAGATCA 113816 Query 25118 ACAGCGGATTATTTTTGCCGG 25138 ||||||| | |||||||| || Sbjct 113817 ACAGCGGCTAATTTTTGCTGG 113837 Score = 91.5 bits (100), Expect = 1e-13 Identities = 111/149 (74%), Gaps = 2/149 (1%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 |||||||| ||||| || ||| | || |||||| | ||||| | |||||||| | || Sbjct 113402 ATGCAAATTTTTGTCAAAACTCTAACTGGTAAAACTATCACTCTTGAAGTGGAAGCTTCA 113461 Query 25059 GACACTATCGAGTCACTGAAG-CAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCA 25117 ||||| || ||| | ||| |||||| ||| ||||||||||| || ||||| || || Sbjct 113462 GACACGATTGAGAACGTAAAGGCAAAAATTCAA-GACAAAGAAGGAATCCCACCAGATCA 113520 Query 25118 ACAGCGGATTATTTTTGCCGGCAAACAAT 25146 ||| | | |||||||| || || |||| Sbjct 113521 GCAGAGATTGATTTTTGCAGGTAATCAAT 113549 >seq143 Length=269893 Score = 86.0 bits (94), Expect = 5e-12 Identities = 105/141 (74%), Gaps = 2/141 (1%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || ||||| |||||| | || || || | ||||| | ||||| || ||||| Sbjct 137475 ATGCAGATCTTTGTGAAGACTCTCACAGGGAAGACAATCACGCTTGAAGTCGAAGCGTCT 137534 Query 25059 GACACTATCGAGTCACTGAA-GCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCA 25117 || ||||| ||| |||| || || | ||| ||||||||||| ||||| ||||| || Sbjct 137535 GATACTATTGAGAATGTGAAAGCCAAGATTCAA-GACAAAGAAGGCATTCCTCCTGATCA 137593 Query 25118 ACAGCGGATTATTTTTGCCGG 25138 |||||| | ||||| || || Sbjct 137594 ACAGCGACTCATTTTCGCAGG 137614 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433290202558955