Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyocaulus_20viviparus_20[genbank_20GCA_5F000816705.1_202015-03- 12] 7,157 sequences; 160,963,781 total letters Query= NC_008586.1 Length=131204 Score E Sequences producing significant alignments: (Bits) Value seq9 114 1e-20 seq271 98.7 8e-16 seq143 86.0 5e-12 >seq9 Length=784367 Score = 114 bits (126), Expect = 1e-20 Identities = 110/141 (78%), Gaps = 0/141 (0%) Strand=Plus/Plus Query 22218 GATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCAC 22277 |||||| |||||||| ||||| || || |||||||| ||||||||||||||||| | | Sbjct 113697 GATGCAGATTTTTGTCAAAACCTTGACTGGTAAAACTATCACTCTTGAAGTGGAAGCTTC 113756 Query 22278 CGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCA 22337 || || | || || | ||| ||||||||||||||| || || || ||||| ||||| Sbjct 113757 AGACACAATTGAGAATGTGAAAGCAAAAATTCAAGACAAAGAAGGAATCCCACCAGATCA 113816 Query 22338 ACAACGTCTTATATTTGCCGG 22358 ||| || || || ||||| || Sbjct 113817 ACAGCGGCTAATTTTTGCTGG 113837 Score = 104 bits (114), Expect = 2e-17 Identities = 111/147 (76%), Gaps = 0/147 (0%) Strand=Plus/Plus Query 22218 GATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCAC 22277 ||||||||||||||| |||||| |||| |||||||| ||||||||||||||||| | | Sbjct 113401 GATGCAAATTTTTGTCAAAACTCTAACTGGTAAAACTATCACTCTTGAAGTGGAAGCTTC 113460 Query 22278 CGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCA 22337 || || | || | | || ||||||||||||||| || || || ||||| ||||| Sbjct 113461 AGACACGATTGAGAACGTAAAGGCAAAAATTCAAGACAAAGAAGGAATCCCACCAGATCA 113520 Query 22338 ACAACGTCTTATATTTGCCGGCAAACA 22364 || | | || ||||| || || || Sbjct 113521 GCAGAGATTGATTTTTGCAGGTAATCA 113547 Score = 91.5 bits (100), Expect = 1e-13 Identities = 106/143 (74%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || ||||| ||||| | ||||| || ||| | || || || || ||| || || Sbjct 113092 ATGCAGATATTTGTGAAAACACTTACCGGGAAGACGATTACACTAGAGGTTGAAGCCTCC 113151 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || || | || || | ||| |||||||||||| || || || |||||||| |||||| Sbjct 113152 GACACAATTGAGAATGTGAAAGCAAAAATTCAAGATAAAGAAGGAATTCCACCGGATCAA 113211 Query 22339 CAACGTCTTATATTTGCCGGCAA 22361 || || | |||||||| || || Sbjct 113212 CAGCGCTTGATATTTGCTGGTAA 113234 >seq271 Length=165737 Score = 98.7 bits (108), Expect = 8e-16 Identities = 107/142 (75%), Gaps = 0/142 (0%) Strand=Plus/Plus Query 22217 AGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCA 22276 ||||||||||||| || || ||| | || || ||||| |||||||||||||||| || Sbjct 44641 AGATGCAAATTTTCGTGAAGACTCTTACTGGAAAAACTATCACTCTTGAAGTGGAGGCCT 44700 Query 22277 CCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATC 22336 | || ||| | || || | ||| ||| || ||||| ||||| || ||||| || || | Sbjct 44701 CTGACACCATTGAGAATGTTAAAGCAAAGATCCAAGATAAGGAAGGCATTCCTCCAGACC 44760 Query 22337 AACAACGTCTTATATTTGCCGG 22358 ||||||| | || || ||||| Sbjct 44761 AACAACGGTTGATCTTCGCCGG 44782 >seq143 Length=269893 Score = 86.0 bits (94), Expect = 5e-12 Identities = 103/140 (74%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| ||||||||||| || ||||| || || ||| |||| || || || || | | Sbjct 137802 ATGCAGATTTTTGTTAAGACATTAACAGGGAAGACGATCACACTGGAGGTTGAGGCATCT 137861 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 |||||| | || | | || || || ||||||||||| || ||||| || ||||| Sbjct 137862 GATACCATCGAGAACGTTAAGGCCAAGATCCAAGACAAGGAAGGAATTCCTCCTGATCAG 137921 Query 22339 CAACGTCTTATATTTGCCGG 22358 || |||||||| ||||| || Sbjct 137922 CAGCGTCTTATCTTTGCTGG 137941 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 419691388831705