Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyocaulus_20viviparus_20[genbank_20GCA_5F000816705.1_202015-03- 12] 7,157 sequences; 160,963,781 total letters Query= NC_008724.1 Length=288047 Score E Sequences producing significant alignments: (Bits) Value seq271 113 8e-20 seq9 109 1e-18 seq143 104 4e-17 seq1461 91.5 3e-13 seq6338 87.8 3e-12 seq79 86.0 1e-11 >seq271 Length=165737 Score = 113 bits (124), Expect = 8e-20 Identities = 109/140 (78%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 68322 CCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAATCTTTGCC 68381 |||||||| || | | ||||||||| || |||||||||||||| ||||| |||||||| Sbjct 44782 CCGGCGAAGATCAACCGTTGTTGGTCTGGAGGAATGCCTTCCTTATCTTGGATCTTTGCT 44723 Query 68382 TTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTTCCCGTGAGG 68441 || || ||| |||||||| | | || ||||| | ||||| |||||||| || || Sbjct 44722 TTAACATTCTCAATGGTGTCAGAGGCCTCCACTTCAAGAGTGATAGTTTTTCCAGTAAGA 44663 Query 68442 GTCTTGACGAATATCTGCAT 68461 ||||| ||||| || ||||| Sbjct 44662 GTCTTCACGAAAATTTGCAT 44643 >seq9 Length=784367 Score = 109 bits (120), Expect = 1e-18 Identities = 108/140 (77%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 68322 CCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAATCTTTGCC 68381 || ||||| || |||||||||||||| ||||| || |||||||| ||||| || || | | Sbjct 114612 CCCGCGAAAATTAGTCTTTGTTGGTCTGGTGGGATACCTTCCTTATCTTGTATTTTCGTC 114553 Query 68382 TTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTTCCCGTGAGG 68441 || || || || ||||||| | || |||||||| ||||| || ||||| || || Sbjct 114552 TTCACATTTTCAATAGTGTCTGAGGCCTCAACTTCCAACGTGATCGTCTTTCCTGTTAGC 114493 Query 68442 GTCTTGACGAATATCTGCAT 68461 ||||| || ||||| ||||| Sbjct 114492 GTCTTCACAAATATTTGCAT 114473 Score = 102 bits (112), Expect = 2e-16 Identities = 110/146 (75%), Gaps = 0/146 (0%) Strand=Plus/Minus Query 68316 TGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAATC 68375 || || || || || || | ||| || || || ||||| || ||||| ||||||||||| Sbjct 113547 TGATTACCTGCAAAAATCAATCTCTGCTGATCTGGTGGGATTCCTTCTTTGTCTTGAATT 113488 Query 68376 TTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTTCCC 68435 |||||||| ||| ||| || ||||||| | ||| ||||| | ||||| ||||| || Sbjct 113487 TTTGCCTTTACGTTCTCAATCGTGTCTGAAGCTTCCACTTCAAGAGTGATAGTTTTACCA 113428 Query 68436 GTGAGGGTCTTGACGAATATCTGCAT 68461 || || || ||||| || || ||||| Sbjct 113427 GTTAGAGTTTTGACAAAAATTTGCAT 113402 Score = 95.1 bits (104), Expect = 2e-14 Identities = 105/140 (75%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 68322 CCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAATCTTTGCC 68381 || || || || || | ||||| || ||||| || ||||| ||||||||||| ||||| Sbjct 113837 CCAGCAAAAATTAGCCGCTGTTGATCTGGTGGGATTCCTTCTTTGTCTTGAATTTTTGCT 113778 Query 68382 TTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTTCCCGTGAGG 68441 || || ||| || ||||||| | ||| ||||| | ||||| ||||| || || | | Sbjct 113777 TTCACATTCTCAATTGTGTCTGAAGCTTCCACTTCAAGAGTGATAGTTTTACCAGTCAAG 113718 Query 68442 GTCTTGACGAATATCTGCAT 68461 || ||||| || |||||||| Sbjct 113717 GTTTTGACAAAAATCTGCAT 113698 >seq143 Length=269893 Score = 104 bits (114), Expect = 4e-17 Identities = 107/140 (76%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 68322 CCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAATCTTTGCC 68381 || ||||| ||||||| ||||| || || ||||||||||| |||||||||||||| || Sbjct 137614 CCTGCGAAAATGAGTCGCTGTTGATCAGGAGGAATGCCTTCTTTGTCTTGAATCTTGGCT 137555 Query 68382 TTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTTCCCGTGAGG 68441 || || ||| || || || | | ||| ||||| | ||||| || || || ||||| Sbjct 137554 TTCACATTCTCAATAGTATCAGACGCTTCGACTTCAAGCGTGATTGTCTTCCCTGTGAGA 137495 Query 68442 GTCTTGACGAATATCTGCAT 68461 ||||| || || |||||||| Sbjct 137494 GTCTTCACAAAGATCTGCAT 137475 Score = 93.3 bits (102), Expect = 8e-14 Identities = 105/141 (74%), Gaps = 0/141 (0%) Strand=Plus/Minus Query 68322 CCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAATCTTTGCC 68381 || || || || || | || || || || ||||| |||||||||||||| ||||| ||| Sbjct 137941 CCAGCAAAGATAAGACGCTGCTGATCAGGAGGAATTCCTTCCTTGTCTTGGATCTTGGCC 137882 Query 68382 TTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTTCCCGTGAGG 68441 || ||| ||||||||| || | || || || |||| ||||| || || || || | Sbjct 137881 TTAACGTTCTCGATGGTATCAGATGCCTCAACCTCCAGTGTGATCGTCTTCCCTGTTAAT 137822 Query 68442 GTCTTGACGAATATCTGCATT 68462 ||||| || || ||||||||| Sbjct 137821 GTCTTAACAAAAATCTGCATT 137801 Score = 84.2 bits (92), Expect = 4e-11 Identities = 105/144 (73%), Gaps = 0/144 (0%) Strand=Plus/Minus Query 68318 CTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAATCTT 68377 ||| || |||||||| | | || || || || || || |||||||||||||||||||| Sbjct 138582 CTTACCAGCGAATATCAAACGCTGCTGATCTGGAGGGATCCCTTCCTTGTCTTGAATCTT 138523 Query 68378 TGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTTCCCGT 68437 || || || ||| || ||||| | | || ||||| | ||| || || || || || Sbjct 138522 AGCTTTCACATTCTCAATTGTGTCCGACGCCTCGACTTCAAGGGTTATTGTCTTCCCTGT 138463 Query 68438 GAGGGTCTTGACGAATATCTGCAT 68461 || ||||| ||||| || ||||| Sbjct 138462 CAGAGTCTTCACGAAAATTTGCAT 138439 >seq1461 Length=7029 Score = 91.5 bits (100), Expect = 3e-13 Identities = 64/73 (88%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 84455 CGCCCGGTTAGCTCAGTCGGCAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 84514 |||||||||||||||||||| ||||| | || ||||||| || | |||| ||||||||| Sbjct 1124 CGCCCGGTTAGCTCAGTCGGTAGAGCACCAGACTCTTAATCTGGCTGTCGCGGGTTCGAG 1065 Query 84515 CCCCACATCGGGC 84527 ||||||||||||| Sbjct 1064 CCCCACATCGGGC 1052 Score = 87.8 bits (96), Expect = 3e-12 Identities = 63/73 (86%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 84455 CGCCCGGTTAGCTCAGTCGGCAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 84514 |||||||||||||||||||| ||||| | || ||||||| || | |||| ||||||||| Sbjct 339 CGCCCGGTTAGCTCAGTCGGTAGAGCACCAGACTCTTAATCTGGCTGTCGCGGGTTCGAG 280 Query 84515 CCCCACATCGGGC 84527 |||| |||||||| Sbjct 279 CCCCGCATCGGGC 267 Score = 87.8 bits (96), Expect = 3e-12 Identities = 63/73 (86%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 84455 CGCCCGGTTAGCTCAGTCGGCAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 84514 |||||||||||||||||||| ||||| | || ||||||| || | |||| ||||||||| Sbjct 767 CGCCCGGTTAGCTCAGTCGGTAGAGCACCAGACTCTTAATCTGGCTGTCGCGGGTTCGAG 708 Query 84515 CCCCACATCGGGC 84527 |||| |||||||| Sbjct 707 CCCCGCATCGGGC 695 >seq6338 Length=1070 Score = 87.8 bits (96), Expect = 3e-12 Identities = 63/73 (86%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 84455 CGCCCGGTTAGCTCAGTCGGCAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 84514 |||||||||||||||||||| ||||| | || ||||||| || | |||| ||||||||| Sbjct 894 CGCCCGGTTAGCTCAGTCGGTAGAGCACCAGACTCTTAATCTGGCTGTCGCGGGTTCGAG 835 Query 84515 CCCCACATCGGGC 84527 |||| |||||||| Sbjct 834 CCCCGCATCGGGC 822 >seq79 Length=364097 Score = 86.0 bits (94), Expect = 1e-11 Identities = 62/72 (86%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 84456 GCCCGGTTAGCTCAGTCGGCAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 84515 ||||||||||||||||||| ||||| | || ||||||| || | |||| |||||||||| Sbjct 36474 GCCCGGTTAGCTCAGTCGGTAGAGCACCAGACTCTTAATCTGGCTGTCGCGGGTTCGAGC 36533 Query 84516 CCCACATCGGGC 84527 ||| |||||||| Sbjct 36534 CCCGCATCGGGC 36545 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 921539949356040