Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyocaulus_20viviparus_20[genbank_20GCA_5F000816705.1_202015-03- 12] 7,157 sequences; 160,963,781 total letters Query= NC_009898.1 Length=368683 Score E Sequences producing significant alignments: (Bits) Value seq9 100 7e-16 seq143 89.7 1e-12 >seq9 Length=784367 Score = 100 bits (110), Expect = 7e-16 Identities = 108/143 (76%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 288331 TTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTC 288390 || || || || |||| ||||||||| ||| |||||||||||||| || ||||| Sbjct 113234 TTACCAGCAAATATCAAGCGCTGTTGATCCGGTGGAATTCCTTCTTTATCTTGAATTTTT 113175 Query 288391 GCTTTCACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTC 288450 |||||||| || || || | ||| | ||| || || || || |||||||||||||| Sbjct 113174 GCTTTCACATTCTCAATTGTGTCGGAGGCTTCAACCTCTAGTGTAATCGTCTTCCCGGTA 113115 Query 288451 AGAGTCTTGACGAATATCTGCAT 288473 || || || || ||||||||||| Sbjct 113114 AGTGTTTTCACAAATATCTGCAT 113092 Score = 86.0 bits (94), Expect = 1e-11 Identities = 103/140 (74%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 288334 CCTGCGAAGATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCT 288393 || || || || || ||||||||| ||||||||||||||| || || ||||| ||| Sbjct 113837 CCAGCAAAAATTAGCCGCTGTTGATCTGGTGGGATTCCTTCTTTGTCTTGAATTTTTGCT 113778 Query 288394 TTCACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGA 288453 ||||| || || || | || | ||| ||||| || ||||| || || || |||| Sbjct 113777 TTCACATTCTCAATTGTGTCTGAAGCTTCCACTTCAAGAGTGATAGTTTTACCAGTCAAG 113718 Query 288454 GTCTTGACGAATATCTGCAT 288473 || ||||| || |||||||| Sbjct 113717 GTTTTGACAAAAATCTGCAT 113698 Score = 84.2 bits (92), Expect = 5e-11 Identities = 85/111 (77%), Gaps = 0/111 (0%) Strand=Plus/Minus Query 288363 TGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTC 288422 |||||| ||||| ||||| || ||||||| ||||| ||||| |||| || | || Sbjct 114583 TGGGATACCTTCCTTATCTTGTATTTTCGTCTTCACATTTTCAATAGTGTCTGAGGCCTC 114524 Query 288423 TACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 ||||| | |||||||||||| || || || ||||| || ||||| ||||| Sbjct 114523 AACTTCCAACGTGATCGTCTTTCCTGTTAGCGTCTTCACAAATATTTGCAT 114473 >seq143 Length=269893 Score = 89.7 bits (98), Expect = 1e-12 Identities = 108/146 (74%), Gaps = 6/146 (4%) Strand=Plus/Minus Query 288331 TTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGG---GATTCCTTCTTTATCCTGGATT 288387 || || ||||| |||| |||||| ||| ||||| ||| ||||| || || || || Sbjct 138581 TTACCAGCGAATATCAAACGCTGCTGA---TCTGGAGGGATCCCTTCCTTGTCTTGAATC 138525 Query 288388 TTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCG 288447 || |||||||| || || || | || || || ||||| || || || |||||||| Sbjct 138524 TTAGCTTTCACATTCTCAATTGTGTCCGACGCCTCGACTTCAAGGGTTATTGTCTTCCCT 138465 Query 288448 GTCAGAGTCTTGACGAATATCTGCAT 288473 ||||||||||| ||||| || ||||| Sbjct 138464 GTCAGAGTCTTCACGAAAATTTGCAT 138439 Score = 84.2 bits (92), Expect = 5e-11 Identities = 103/141 (73%), Gaps = 0/141 (0%) Strand=Plus/Minus Query 288334 CCTGCGAAGATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCT 288393 || || ||||| |||||||| ||| | || |||||||| || || ||||| || || Sbjct 137941 CCAGCAAAGATAAGACGCTGCTGATCAGGAGGAATTCCTTCCTTGTCTTGGATCTTGGCC 137882 Query 288394 TTCACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGA 288453 || ||||| || || | ||| | || || || || |||||||||||||| || | Sbjct 137881 TTAACGTTCTCGATGGTATCAGATGCCTCAACCTCCAGTGTGATCGTCTTCCCTGTTAAT 137822 Query 288454 GTCTTGACGAATATCTGCATT 288474 ||||| || || ||||||||| Sbjct 137821 GTCTTAACAAAAATCTGCATT 137801 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1179546226797446