Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyocaulus_20viviparus_20[genbank_20GCA_5F000816705.1_202015-03- 12] 7,157 sequences; 160,963,781 total letters Query= NC_010276.1 Length=156179 Score E Sequences producing significant alignments: (Bits) Value seq9 95.1 1e-14 seq143 93.3 4e-14 seq271 86.0 6e-12 >seq9 Length=784367 Score = 95.1 bits (104), Expect = 1e-14 Identities = 107/141 (76%), Gaps = 2/141 (1%) Strand=Plus/Minus Query 64304 CCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGC 64363 || ||| |||| |||||||| || || || || ||||||||||| ||||| | ||||||| Sbjct 113837 CCAGCAAAAATTAGCCGCTGTTGATCTGGTGGGATTCCTTCTTTGTCTTG-AATTTTTGC 113779 Query 64364 TTT-ACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTCAA 64422 ||| ||| ||| | ||| || || |||||||| | ||| | || || || ||||| Sbjct 113778 TTTCACATTCTCAATTGTGTCTGAAGCTTCCACTTCAAGAGTGATAGTTTTACCAGTCAA 113719 Query 64423 AGTTTTTACGAAAATTTGCAT 64443 ||||| || ||||| ||||| Sbjct 113718 GGTTTTGACAAAAATCTGCAT 113698 Score = 84.2 bits (92), Expect = 2e-11 Identities = 106/146 (73%), Gaps = 0/146 (0%) Strand=Plus/Minus Query 64298 TGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATT 64357 || || || ||| |||| | | |||||| || || || ||||||||||| ||||| ||| Sbjct 113547 TGATTACCTGCAAAAATCAATCTCTGCTGATCTGGTGGGATTCCTTCTTTGTCTTGAATT 113488 Query 64358 TTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCG 64417 ||| |||||| ||| | || || || |||||||| | ||| | || || || Sbjct 113487 TTTGCCTTTACGTTCTCAATCGTGTCTGAAGCTTCCACTTCAAGAGTGATAGTTTTACCA 113428 Query 64418 GTCAAAGTTTTTACGAAAATTTGCAT 64443 || | |||||| || ||||||||||| Sbjct 113427 GTTAGAGTTTTGACAAAAATTTGCAT 113402 >seq143 Length=269893 Score = 93.3 bits (102), Expect = 4e-14 Identities = 99/131 (76%), Gaps = 0/131 (0%) Strand=Plus/Minus Query 64313 ATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACC 64372 || || || |||||||| ||||| ||||||||||| |||||||| || ||||||| Sbjct 138249 ATCAGGCGTTGCTGGTCCGGAGGGATTCCTTCTTTATCTTGTATCTTAGCCTTTACATTT 138190 Query 64373 TCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACG 64432 || | || ||| || ||||| |||| |||| ||||| || |||| || ||||| Sbjct 138189 TCAATCGTGTCAGATGCCTCCACCTCTAGGGTTATTGTCTTTCCTGTCAGCGTCTTTACA 138130 Query 64433 AAAATTTGCAT 64443 ||||||||||| Sbjct 138129 AAAATTTGCAT 138119 >seq271 Length=165737 Score = 86.0 bits (94), Expect = 6e-12 Identities = 105/141 (74%), Gaps = 2/141 (1%) Strand=Plus/Minus Query 64304 CCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGC 64363 ||||| | || | ||| || ||||| |||||||| ||||| || ||||| || ||| || Sbjct 44782 CCGGCGAAGATCAACCGTTGTTGGTCTGGAGGAATGCCTTCCTTATCTTGGATCTTT-GC 44724 Query 64364 TTTA-CAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTCAA 64422 |||| || ||| | || ||| ||| |||||||| | ||| | || || || || | Sbjct 44723 TTTAACATTCTCAATGGTGTCAGAGGCCTCCACTTCAAGAGTGATAGTTTTTCCAGTAAG 44664 Query 64423 AGTTTTTACGAAAATTTGCAT 64443 ||| || |||||||||||||| Sbjct 44663 AGTCTTCACGAAAATTTGCAT 44643 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 499600100527080