Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyocaulus_20viviparus_20[genbank_20GCA_5F000816705.1_202015-03- 12] 7,157 sequences; 160,963,781 total letters Query= NC_012639.1 Length=141291 Score E Sequences producing significant alignments: (Bits) Value seq9 111 1e-19 seq271 102 7e-17 seq919 84.2 2e-11 seq143 82.4 7e-11 >seq9 Length=784367 Score = 111 bits (122), Expect = 1e-19 Identities = 116/150 (77%), Gaps = 2/150 (1%) Strand=Plus/Minus Query 45193 ATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGAA 45252 |||| || ||||| | ||||||| ||||| || || || || |||||||| ||||||| Sbjct 113549 ATTGATTACCTGCAAAAATCAATCTCTGCTGATCTGGTGGGATTCCTTCTTTGTCTTGAA 113490 Query 45253 TTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTG 45311 ||||| || | || | || | ||||| |||| || ||||| ||||| | ||||| Sbjct 113489 TTTTTGCCTTTA-CGTTCTCAATCGTGTCTGAAGCTTCCACTTCAAGAGTGATAGTTTTA 113431 Query 45312 CCGGTTAGAGTTTTTACAAAAATTTGCATC 45341 || ||||||||||| ||||||||||||||| Sbjct 113430 CCAGTTAGAGTTTTGACAAAAATTTGCATC 113401 Score = 96.9 bits (106), Expect = 3e-15 Identities = 101/133 (76%), Gaps = 0/133 (0%) Strand=Plus/Minus Query 45208 ATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCG 45267 ||||||| || || || ||||| ||||| ||||||||||||||||||||| ||| | Sbjct 113224 ATATCAAGCGCTGTTGATCCGGTGGAATTCCTTCTTTATCTTGAATTTTTGCTTTCACAT 113165 Query 45268 CTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTA 45327 || | |||||||| | || || || || |||| ||| || ||||| || ||||| | Sbjct 113164 TCTCAATTGTGTCGGAGGCTTCAACCTCTAGTGTAATCGTCTTCCCGGTAAGTGTTTTCA 113105 Query 45328 CAAAAATTTGCAT 45340 |||| || ||||| Sbjct 113104 CAAATATCTGCAT 113092 >seq271 Length=165737 Score = 102 bits (112), Expect = 7e-17 Identities = 107/141 (76%), Gaps = 0/141 (0%) Strand=Plus/Minus Query 45201 CCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGAATTTTTTGT 45260 || ||| | ||||| ||||| ||||| || ||||||||||| |||||||| || ||| | Sbjct 44782 CCGGCGAAGATCAACCGTTGTTGGTCTGGAGGAATGCCTTCCTTATCTTGGATCTTTGCT 44723 Query 45261 TTGATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTGCCGGTTAGA 45320 || | || | |||||| || | ||| ||||| ||||| | ||||| || || ||| Sbjct 44722 TTAACATTCTCAATGGTGTCAGAGGCCTCCACTTCAAGAGTGATAGTTTTTCCAGTAAGA 44663 Query 45321 GTTTTTACAAAAATTTGCATC 45341 || || || |||||||||||| Sbjct 44662 GTCTTCACGAAAATTTGCATC 44642 >seq919 Length=24097 Score = 84.2 bits (92), Expect = 2e-11 Identities = 183/274 (67%), Gaps = 0/274 (0%) Strand=Plus/Plus Query 122899 AGGTCGCCGAACGTATTCAACATATGCTCATGCGCGTCGCTATAGGCGTGCACGGACGCG 122958 |||| || ||||| || |||||||||||||| || || |||||| | || || | Sbjct 20258 AGGTTGCGGAACGGCCACAGCATATGCTCATGCGTGTTGCAATAGGCATCCATGGTGAAG 20317 Query 122959 ACATCGAAAACGCGACCGAAACTTACGATTTGATGTCTCAAAAATTTTTCACGCACGCGA 123018 | ||||| || | ||||| ||| || ||||| | || || |||||| || ||| Sbjct 20318 ATATCGACGCGGCAATTGAAACCTACAATCTGATGAGTGAACGATATTTCACTCATGCGT 20377 Query 123019 GTCCCACTTTGTTCGCCGCCGGCACGAAGTTGCCTCAGTTGTCTTCGTGTTTTTTGCTCA 123078 || || ||||| || || || || | ||| || | |||||||| || ||| | | Sbjct 20378 CACCAACGCTGTTCAATGCAGGAACAAATTGGCCACAACTTTCTTCGTGCTTCTTGTTGA 20437 Query 123079 CCTTGCGCGAAGACAGCATCACCGGTATCTATGAAACTTTGCGCGATTGCGCGTTGATTT 123138 | || | ||||| ||| | || || ||||| || | | || || ||||| | Sbjct 20438 CTATGAGTGAAGATTCCATTGCGGGGATATATGATACGCTAAAGCAGTGTGCTTTGATCT 20497 Query 123139 CCAAATTTGGCGGCGGCATAGGCGTGAACGTGCA 123172 | ||| || ||| || || ||| |||| ||||| Sbjct 20498 CAAAAAGTGCCGGTGGAATCGGCTTGAATGTGCA 20531 >seq143 Length=269893 Score = 82.4 bits (90), Expect = 7e-11 Identities = 102/140 (73%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 45201 CCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGAATTTTTTGT 45260 || ||| | |||| |||||||||||||| || || |||||||||||||| || || Sbjct 138258 CCAGCGAAGATCAGGCGTTGCTGGTCCGGAGGGATTCCTTCTTTATCTTGTATCTTAGCC 138199 Query 45261 TTGATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTGCCGGTTAGA 45320 || | ||| | ||||| || | ||| || || || || | || || || || || Sbjct 138198 TTTACATTTTCAATCGTGTCAGATGCCTCCACCTCTAGGGTTATTGTCTTTCCTGTCAGC 138139 Query 45321 GTTTTTACAAAAATTTGCAT 45340 || ||||||||||||||||| Sbjct 138138 GTCTTTACAAAAATTTGCAT 138119 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 451962762663720