Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyocaulus_20viviparus_20[genbank_20GCA_5F000816705.1_202015-03- 12] 7,157 sequences; 160,963,781 total letters Query= NC_014637.1 Length=617453 Score E Sequences producing significant alignments: (Bits) Value seq216 147 9e-30 seq168 132 2e-25 seq271 113 2e-19 seq9 107 8e-18 seq143 86.0 2e-11 seq302 84.2 9e-11 >seq216 Length=210855 Score = 147 bits (162), Expect = 9e-30 Identities = 205/287 (71%), Gaps = 3/287 (1%) Strand=Plus/Minus Query 451319 GATGCAGTAATTACTGTTCCCGCTTATTTCAATGATGCACAACGGCAAGCAACTAAAGAT 451378 ||||| || ||||| || || || || ||||| ||| | || || ||||| ||||||||| Sbjct 130385 GATGCTGTCATTACGGTCCCTGCCTACTTCAACGATTCGCAGCGTCAAGCTACTAAAGAT 130326 Query 451379 GCAGGACATATTGCTGGTTTAAATGTTCTTCGAATTATTAATGAACCTACAGCAGCTGCT 451438 || ||| ||| || || | |||||||||||||| |||||||||||||| || ||||| Sbjct 130325 GCGGGAGCTATCGCAGGGCTTAATGTTCTTCGAATAATTAATGAACCTACTGCTGCTGCA 130266 Query 451439 CTAGCATATGGACTAGGAAAATCAAAAGAAACAGAAGaaaaaaaTATTTTAGTATTTGAT 451498 | || || || |||| || |||| ||||| |||| || | | | ||||| Sbjct 130265 ATTGCTTACGGGCTAGATAA---GAAAGGAACAGGAGAACGTAACGTCCTCATTTTTGAC 130209 Query 451499 TTTGGTGGAGGAACTCATGATACTTCTGTACTTTCAATTGAAGATGGGGTATTTGAAGTA 451558 ||||||| || ||| ||| ||| | | | || |||||||| | || |||||| Sbjct 130208 CTTGGTGGTGGGACTTTCGATGTTTCCATTTTGACCATAGAAGATGGCATTTTCGAAGTA 130149 Query 451559 AAGGCAACCAATGGTGATACTCATCTAGGAGGTGAAGATATTGATAA 451605 ||| | ||| ||| || || ||||| ||||| || || | ||||| Sbjct 130148 AAGTCGACCGCTGGAGACACGCATCTTGGAGGAGAGGACTTCGATAA 130102 >seq168 Length=259614 Score = 132 bits (146), Expect = 2e-25 Identities = 157/213 (74%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 451242 CTCCTGAAGAAATTTCATCTATGGTTCTTACTAAAATGAAAGAAACAGCAGAACAATATA 451301 ||||||||||||| || | ||||| | |||||||| |||| || || ||| Sbjct 88984 CTCCTGAAGAAATATCCGCCATGGTATTGGGCAAAATGAAGGAAATCGCTGAGTCCTATC 88925 Query 451302 TTGGTTCTCCAGTTACTGATGCAGTAATTACTGTTCCCGCTTATTTCAATGATGCACAAC 451361 | || ||||| | || ||| ||||||| || || |||||||| |||||||||| Sbjct 88924 TAGGAAAAGAAGTTAAGCACGCTGTAGTTACTGTACCTGCATATTTCAACGATGCACAAC 88865 Query 451362 GGCAAGCAACTAAAGATGCAGGACATATTGCTGGTTTAAATGTTCTTCGAATTATTAATG 451421 | ||||| || |||||||| ||| |||||||||| | || ||| | ||||| || || | Sbjct 88864 GTCAAGCTACAAAAGATGCTGGAACTATTGCTGGTCTCAACGTTGTACGAATAATCAACG 88805 Query 451422 AACCTACAGCAGCTGCTCTAGCATATGGACTAG 451454 |||| || ||||||||| |||| || || |||| Sbjct 88804 AACCCACTGCAGCTGCTATAGCTTACGGTCTAG 88772 >seq271 Length=165737 Score = 113 bits (124), Expect = 2e-19 Identities = 106/135 (79%), Gaps = 0/135 (0%) Strand=Plus/Plus Query 391050 ATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATCT 391109 ||| | |||||||| || || || ||||| |||||||| |||||||| || || | ||| Sbjct 44643 ATGCAAATTTTCGTGAAGACTCTTACTGGAAAAACTATCACTCTTGAAGTGGAGGCCTCT 44702 Query 391110 GATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCAA 391169 || | |||||| | ||||| ||| || |||||||||||||| |||||||| || ||| Sbjct 44703 GACACCATTGAGAATGTTAAAGCAAAGATCCAAGATAAGGAAGGCATTCCTCCAGACCAA 44762 Query 391170 CAACGTTTAATTTTC 391184 ||||| || || ||| Sbjct 44763 CAACGGTTGATCTTC 44777 >seq9 Length=784367 Score = 107 bits (118), Expect = 8e-18 Identities = 104/134 (78%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 391050 ATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATCT 391109 ||| | ||||| || ||||| |||||||||||||||| |||||||| || ||| | || Sbjct 113698 ATGCAGATTTTTGTCAAAACCTTGACTGGTAAAACTATCACTCTTGAAGTGGAAGCTTCA 113757 Query 391110 GATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCAA 391169 || | ||||| | | ||| |||||||||||| || |||||||| || || |||||| Sbjct 113758 GACACAATTGAGAATGTGAAAGCAAAAATTCAAGACAAAGAAGGAATCCCACCAGATCAA 113817 Query 391170 CAACGTTTAATTTT 391183 || || ||||||| Sbjct 113818 CAGCGGCTAATTTT 113831 Score = 95.1 bits (104), Expect = 5e-14 Identities = 109/147 (74%), Gaps = 0/147 (0%) Strand=Plus/Plus Query 391050 ATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATCT 391109 ||| | ||||| || ||||| || |||||||||||||| |||||||| || ||| | || Sbjct 113402 ATGCAAATTTTTGTCAAAACTCTAACTGGTAAAACTATCACTCTTGAAGTGGAAGCTTCA 113461 Query 391110 GATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCAA 391169 || | ||||| | || |||||||||||| || |||||||| || || ||||| Sbjct 113462 GACACGATTGAGAACGTAAAGGCAAAAATTCAAGACAAAGAAGGAATCCCACCAGATCAG 113521 Query 391170 CAACGTTTAATTTTCTCAGGGAAACAA 391196 || | || ||||| |||| || ||| Sbjct 113522 CAGAGATTGATTTTTGCAGGTAATCAA 113548 Score = 93.3 bits (102), Expect = 2e-13 Identities = 101/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 391050 ATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATCT 391109 ||| | || || || |||||||| || || || || ||||| || || |||||| | || Sbjct 113092 ATGCAGATATTTGTGAAAACACTTACCGGGAAGACGATTACACTAGAGGTTGAAGCCTCC 113151 Query 391110 GATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCAA 391169 || | ||||| | | ||| ||||||||||||||| ||||||||||| || |||||| Sbjct 113152 GACACAATTGAGAATGTGAAAGCAAAAATTCAAGATAAAGAAGGAATTCCACCGGATCAA 113211 Query 391170 CAACGTTTAATTTT 391183 || || || || || Sbjct 113212 CAGCGCTTGATATT 113225 >seq143 Length=269893 Score = 86.0 bits (94), Expect = 2e-11 Identities = 103/140 (74%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 391050 ATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATCT 391109 ||| | || || || || || || || || || || || || ||||| || ||| | ||| Sbjct 137475 ATGCAGATCTTTGTGAAGACTCTCACAGGGAAGACAATCACGCTTGAAGTCGAAGCGTCT 137534 Query 391110 GATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCAA 391169 |||| ||||| | | ||| || |||||||| || ||||| ||||||||||||||| Sbjct 137535 GATACTATTGAGAATGTGAAAGCCAAGATTCAAGACAAAGAAGGCATTCCTCCTGATCAA 137594 Query 391170 CAACGTTTAATTTTCTCAGG 391189 || || | |||||| |||| Sbjct 137595 CAGCGACTCATTTTCGCAGG 137614 Score = 86.0 bits (94), Expect = 2e-11 Identities = 100/135 (74%), Gaps = 0/135 (0%) Strand=Plus/Plus Query 391049 AATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATC 391108 |||| | ||||| ||||| ||| | || || || || || || || || ||||| |||| Sbjct 137801 AATGCAGATTTTTGTTAAGACATTAACAGGGAAGACGATCACACTGGAGGTTGAGGCATC 137860 Query 391109 TGATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCA 391168 ||||| ||| || |||| || || ||||| ||||||||||||||||||||||| Sbjct 137861 TGATACCATCGAGAACGTTAAGGCCAAGATCCAAGACAAGGAAGGAATTCCTCCTGATCA 137920 Query 391169 ACAACGTTTAATTTT 391183 || ||| | || || Sbjct 137921 GCAGCGTCTTATCTT 137935 >seq302 Length=177480 Score = 84.2 bits (92), Expect = 9e-11 Identities = 70/86 (81%), Gaps = 0/86 (0%) Strand=Plus/Plus Query 451364 CAAGCAACTAAAGATGCAGGACATATTGCTGGTTTAAATGTTCTTCGAATTATTAATGAA 451423 || || || ||||||||||| || |||||||| ||||| ||| | || | ||||||||| Sbjct 71716 CAGGCTACCAAAGATGCAGGGCAAATTGCTGGCTTAAACGTTTTACGTGTGATTAATGAA 71775 Query 451424 CCTACAGCAGCTGCTCTAGCATATGG 451449 |||||||| || ||||| || ||||| Sbjct 71776 CCTACAGCTGCAGCTCTTGCCTATGG 71801 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1975537228474956