Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyocaulus_20viviparus_20[genbank_20GCA_5F000816705.1_202015-03- 12] 7,157 sequences; 160,963,781 total letters Query= NC_014649.1 Length=1181549 Score E Sequences producing significant alignments: (Bits) Value seq216 286 3e-71 seq168 132 4e-25 >seq216 Length=210855 Score = 286 bits (316), Expect = 3e-71 Identities = 683/1015 (67%), Gaps = 16/1015 (2%) Strand=Plus/Plus Query 517301 ACTTCAATTTGAGGGACCCCTCTCTGAGCAGGTGGGATCCCTTCCAAATTAAATGTTCCC 517360 || || ||||| || || || | | ||||| ||||| || || | ||| | || Sbjct 129379 ACCTCGATTTGCGGAACTCCGCGTGGCGCAGGCGGGATGCCAGATAATTCAAACTTCCCT 129438 Query 517361 AGATTATTATTATCTTTAGTGAATTTTCGTTCACCCTCGAAAATTTGGAT-AGTAACTAC 517419 ||| || |||||||| || | | |||||| |||||||||| |||||| |||| || | Sbjct 129439 AGAAGGTTGTTATCTTTGGTCATTGCTCGTTCTCCCTCGAAAACTTGGATCAGTA-CTCC 129497 Query 517420 AGTTTGATTATCTGAATAAGTTGTAAATACTCTGGATTTTTTACAA-GGAATTGTTGTGT 517478 || || ||||| || || || || || | ||||| | | | | || || || || | Sbjct 129498 AGGCTGGTTATCAGAGTACGTAGTGAA-AGTCTGGCTAGTCTTCGTCGGGATGGTAGTAT 129556 Query 517479 TTCTATCAATAATATTGGTCATAATACCACCTGCTGTTTCTAAACCAAGAGAAAGAGGAG 517538 | || | || | | ||||||| || ||||| || || | ||| || |||||||||| Sbjct 129557 TCCTCTTTATCAGAGCAGTCATAACGCCTCCTGCCGTCTCAATACCCAGTGAAAGAGGAG 129616 Query 517539 TGACATCAACTAGGACAATATTTTGAAGTTTTTCATCAGTTTGACCAACAAGAATAGCTG 517598 ||||||| ||| | | || || | ||| | | ||| |||||||| | Sbjct 129617 CCACATCAAGTAGAAGGAGATCCTGGACAGCTTCCGACTTGTCACCTGAGAGAATAGCGG 129676 Query 517599 CTTGAATAGCAGCACCATATGCAACAGCTTCATCAGGATTAACAGTTTCATTTAGTTTTT 517658 |||| | |||||| || || || |||||||||||||| |||| | || |||| | || Sbjct 129677 CTTGCACAGCAGCTCCGTACGCCACAGCTTCATCAGGGTTAATCGATTTGTTTAACTCTT 129736 Query 517659 TACCATTGAAAAAATTTGAAAGAAGTTGTCTTACCTTAGGAATACGAGATGATCCTCCAA 517718 | || ||| || | |||||||| | | || ||||| ||||| | |||||| |||| Sbjct 129737 TCCCTGAGAACAAGTCAGAAAGAAGCTTTTGCACTTTAGGTATACGTGTTGATCCACCAA 129796 Query 517719 CTAATACAATTTCATGCACCTGTGATTTATCCAGTTTTGAATC-CAATAAAACTTTTTCA 517777 | | ||||| |||| || || ||| |||| ||| | ||| | | || ||||| Sbjct 129797 CAAGGACAATATCATTGACTTGACTTTTGTCCATTTTAGCATCTCTAAGCGAC-TTTTCT 129855 Query 517778 ACGGGTTCAAGACCCGCTCTAAACAAGTCTGAACAAAGTTCTTCGAATTTAGCTCTAGTA 517837 || || || | | | | || ||||| | ||| || ||||| || ||| | || Sbjct 129856 ACAGGATCCATAGTAGAACGGAATAAGTCAGCACATAGCTCTTCAAAGCGAGCACGGGTG 129915 Query 517838 AGAGTGACATTA-TAATCAATTCCTTCGAACAAAGAATCAACTTCAATCGTAGTTTGAGT 517896 | || | || ||||||||||||| ||||| ||||||| || || | | || | Sbjct 129916 A-TGTTAGTGTAGAAATCAATTCCTTCAAACAACGAATCAATCTCGATAGACGCCTGTGA 129974 Query 517897 CGAAGAAGATAGTGCACGTTTAGCACGTTCACATGCTGTCCTTAGTCTTCGTA-AGGCTT 517955 || || || | | || ||||| || ||||| || || | || | || | || Sbjct 129975 TGACGATGACAACGTGCGCTTAGCTCGCTCACAGGCAGTACGTAAGCGTCTCAGAGCGCG 130034 Query 517956 TTGCTGATTGATTCAAATCTGTTTTATATTTTCTCTTGAAATCTTCAACACACCATG--T 518013 | | | || |||||||| | |||| |||||| ||||| || | ||| ||| | Sbjct 130035 AGGATTACTG-TTCAAATCCTTCTTATGTTTTCTTTTGAA--CTCCGCCACGAAATGGTT 130091 Query 518014 TACAAGACGATTATCAAAATCTTCACCTCCCAATTTAGTATTTCCTGACGTAGCTCTTAC 518073 ||| | | ||||| || || || ||||| | | || | ||| | || | |||| Sbjct 130092 TACCATTCTGTTATCGAAGTCCTCTCCTCCAAGATGCGTGTCTCCAGCGGTCGACTTTAC 130151 Query 518074 TTGGAAAAGTCCATCTTCAAGAGACAAAAGAGTTACATCATGGGTTCCACCACCCATATC 518133 || ||||| |||||||| | | ||||| | ||||| || |||||||| | || Sbjct 130152 TTCGAAAATGCCATCTTCTATGGTCAAAATGGAAACATCGAAAGTCCCACCACCAAGGTC 130211 Query 518134 AAAAATAAGTACATTCATTTCT-TTGTCTTGGTTTTTATCAAGACCATACGCAAAAGCAG 518192 |||||| || || || |||| ||| | || ||||| || || || |||| |||| Sbjct 130212 AAAAATGAGGACGTTACGTTCTCCTGT-TCCTTTCTTATCTAGCCCGTAAGCAATTGCAG 130270 Query 518193 CAGCAGTTGGTTCATTAATAATTCTCAAAACATTAAGACCAGCAATTCTTCCTGCATCTT 518252 ||||||| ||||||||||| |||| | ||||||||| || || || ||| ||||||| Sbjct 130271 CAGCAGTAGGTTCATTAATTATTCGAAGAACATTAAGCCCTGCGATAGCTCCCGCATCTT 130330 Query 518253 TAGTGGCTTGTCTTTGTGAATCGTTAAAATATGCAGGAACAGTAATAACGGCATC 518307 |||| ||||| | || |||||||| || || ||||| || ||||| || ||||| Sbjct 130331 TAGTAGCTTGACGCTGCGAATCGTTGAAGTAGGCAGGGACCGTAATGACAGCATC 130385 >seq168 Length=259614 Score = 132 bits (146), Expect = 4e-25 Identities = 160/218 (73%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 518165 TTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACA 518224 || ||||| ||||| || || | |||||| ||||| ||||| || || |||| | ||| Sbjct 88765 TTCTTATCTAGACCGTAAGCTATAGCAGCTGCAGTGGGTTCGTTGATTATTCGTACAACG 88824 Query 518225 TTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATAT 518284 || ||||||||||| |||| |||||||| || ||||| | ||||| |||||| |||||| Sbjct 88825 TTGAGACCAGCAATAGTTCCAGCATCTTTTGTAGCTTGACGTTGTGCATCGTTGAAATAT 88884 Query 518285 GCAGGAACAGTAATAACGGCATCAGTTACTTCTTTACCAATATAAGCGCTTGCCGTTTGT 518344 ||||| ||||||| || || | | |||||||| || | ||| | || ||| Sbjct 88885 GCAGGTACAGTAACTACAGCGTGCTTAACTTCTTTTCCTAGATAGGACTCAGCGATTTCC 88944 Query 518345 TTCATTTTACTTAAAATCATTGATGAAATTTGTTCTGG 518382 |||||||| | || | ||| | || |||| ||| || Sbjct 88945 TTCATTTTGCCCAATACCATGGCGGATATTTCTTCAGG 88982 Score = 114 bits (126), Expect = 1e-19 Identities = 207/301 (69%), Gaps = 4/301 (1%) Strand=Plus/Plus Query 517596 CTGCTTGAATAGCAGCACCATATGCAACAGCTTCATCAGGATTAACAGTTTCATTTAGTT 517655 ||||||| | |||||||||||| |||||||||||||||||||| | | | ||| Sbjct 87986 CTGCTTGCACAGCAGCACCATAAGCAACAGCTTCATCAGGATTGATACCTCGTGACGGTT 88045 Query 517656 TTTTACCATTGAAAAAATTTGAAAGAAGTTGTCTTACCTTAGGAATACGAGATGATCCTC 517715 || |||||||| |||| | | | ||| ||||| ||||| || | || || | Sbjct 88046 CCTTTCCATTGAAGAAATCTTTGATCAATTGCTGCACCTTTGGAATGCGGGTGGAACCAC 88105 Query 517716 CAACTAATACAATTTCATGCACCTGTGATTTATCCAGTTTTGAATCCAATAAAACTTTTT 517775 |||||| ||||||||||| |||||| || | || | ||||||| ||||||||||| Sbjct 88106 CAACTAGGACAATTTCATGGACCTGTTCCTTTTTAAGATCTGAATCCTCTAAAACTTTTT 88165 Query 517776 CAACGGGTTCAAGACCCGCTCTAAACAAGTC--TGAACAAAGTTCTTCGAATTTAGCTCT 517833 || |||| | || | ||| | || || | |||||||| ||||| ||||| Sbjct 88166 GCACAGGTTTTAATGTTGCACGAAATAGATCCATGTTC--AGTTCTTCAAATTTGGCTCT 88223 Query 517834 AGTAAGAGTGACATTATAATCAATTCCTTCGAACAAAGAATCAACTTCAATCGTAGTTTG 517893 || || || || | | ||| || || | | ||| || ||||| ||| |||| || Sbjct 88224 GGTCAGTGTTTCAGAAAAGTCATCACCATCCATGATAGACTCCACTTCTATCTTAGTCTG 88283 Query 517894 A 517894 | Sbjct 88284 A 88284 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3780467246084842