Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyocaulus_20viviparus_20[genbank_20GCA_5F000816705.1_202015-03- 12] 7,157 sequences; 160,963,781 total letters Query= NC_014765.1 Length=198519 Score E Sequences producing significant alignments: (Bits) Value seq216 369 5e-97 seq168 143 3e-29 >seq216 Length=210855 Score = 369 bits (408), Expect = 5e-97 Identities = 560/789 (71%), Gaps = 6/789 (1%) Strand=Plus/Plus Query 6953 CCAAGAGACAGAGGTGTCACGTCCAAGAGTAACAGGTCTTGAACAGATTCGTTCCCTTCA 7012 || || || ||||| | ||| || | || | || || || |||| ||| | ||| Sbjct 129601 CCCAGTGAAAGAGGAGCCACATCAAGTAGAAGGAGATCCTGGACAGCTTCCGACTTGTCA 129660 Query 7013 CCCGTTAAGATGGCGGCTTGGACCGTCGCCCCGTATGCGACCGCCTCATCGGGGTTAATC 7072 || | | || |||||||| || | || ||||| || || || ||||| ||||||||| Sbjct 129661 CCTGAGAGAATAGCGGCTTGCACAGCAGCTCCGTACGCCACAGCTTCATCAGGGTTAATC 129720 Query 7073 GTTTTATTCAGTTCTTTACCGTTAAAATAA-TCCGATAACATTTGTTGAATTTTCGGGAT 7131 | ||| || | ||||| || | | || || || || | | | ||| | ||| || || Sbjct 129721 GATTTGTTTAACTCTTTCCC-TGAGAACAAGTCAGAAAGAAGCTTTTGCACTTTAGGTAT 129779 Query 7132 TCGTGTCGATCCACCGACCAAAACGATTTCATTCACTTTCGATTTATCGATCTTTGAGTC 7191 ||||| |||||||| || | || || ||||| |||| ||| || || || | || Sbjct 129780 ACGTGTTGATCCACCAACAAGGACAATATCATTGACTTGACTTTTGTCCATTTTAGCATC 129839 Query 7192 TCGAAGTGTTTTTTCGACAGGTTCCATACATTTACGGAACAAGTCCATACACAGTTCCTC 7251 || ||| | ||||| ||||| |||||| |||||| ||||| ||| || || || Sbjct 129840 TCTAAGCGACTTTTCTACAGGATCCATAGTAGAACGGAATAAGTCAGCACATAGCTCTTC 129899 Query 7252 AAAACGTGCACGGGTAATGGATGTATAGAAATCAACGCCGTCGTATAACGAATCAATTTC 7311 ||| || |||||||| ||| || |||||||||| || || | ||||||||||| || Sbjct 129900 AAAGCGAGCACGGGTGATGTTAGTGTAGAAATCAATTCCTTCAAACAACGAATCAATCTC 129959 Query 7312 AATGGTTGTTTGTGCCGTCGAAGATAACGTTCGCTTTGCGCGCTCACACGCCGTTCGTAA 7371 || | | |||| | ||| || ||||| ||||| || |||||||| || || ||||| Sbjct 129960 GATAGACGCCTGTGATGACGATGACAACGTGCGCTTAGCTCGCTCACAGGCAGTACGTAA 130019 Query 7372 ACGACGAAGGGCACGCGGGTTACCGGAAATATCTTTCTTATGTTTACGTTTAAACTCTTC 7431 || | || || || || |||| | | ||| ||||||||||| | ||| ||||| | Sbjct 130020 GCGTCTCAGAGCGCGAGGATTACTGTTCAAATCCTTCTTATGTTTTCTTTTGAACTCCGC 130079 Query 7432 AGAGAAGTGTCGAAGGAGTCTCGAATCGAAATCTTCACCACCCAAGTGTGTATCCCCCGC 7491 ||| || | | ||| |||||| || || || || | || || || || || Sbjct 130080 CACGAAATGGTTTACCATTCTGTTATCGAAGTCCTCTCCTCCAAGATGCGTGTCTCCAGC 130139 Query 7492 GGTCGCTTTGACTTCAAAGATACCTCCTTCAATGTTTAACAACGAAACATCAAACGTACC 7551 ||||| || ||||| || || || |||| ||| | || | |||||||| || || || Sbjct 130140 GGTCGACTTTACTTCGAAAATGCCATCTTCTATGGTCAAAATGGAAACATCGAAAGTCCC 130199 Query 7552 ACCACCCAGGTCAAAAATGAGTACGTT-CGTATCGTCGTCTT-TGTTCTTATCGAGACCG 7609 |||||| |||||||||||||| ||||| ||| || || | || |||||||| || ||| Sbjct 130200 ACCACCAAGGTCAAAAATGAGGACGTTACGT-TC-TCCTGTTCCTTTCTTATCTAGCCCG 130257 Query 7610 TACGCGATAGCCGCCGCCGTTGGTTCATTAATAATACGAAGACAGTTCAGGCCAGCAATA 7669 || || || || || || || ||||||||||| || |||||| || || || || ||| Sbjct 130258 TAAGCAATTGCAGCAGCAGTAGGTTCATTAATTATTCGAAGAACATTAAGCCCTGCGATA 130317 Query 7670 GTTGCCGCATCTTTCGTCGCTTGTCGTTGCGAATCGTTAAAGTAGGCCGGGACCGTTACG 7729 | | |||||||||| || ||||| || ||||||||||| |||||||| |||||||| | | Sbjct 130318 GCTCCCGCATCTTTAGTAGCTTGACGCTGCGAATCGTTGAAGTAGGCAGGGACCGTAATG 130377 Query 7730 ACCGCGTCC 7738 || || ||| Sbjct 130378 ACAGCATCC 130386 >seq168 Length=259614 Score = 143 bits (158), Expect = 3e-29 Identities = 162/217 (75%), Gaps = 0/217 (0%) Strand=Plus/Plus Query 7595 TTCTTATCGAGACCGTACGCGATAGCCGCCGCCGTTGGTTCATTAATAATACGAAGACAG 7654 |||||||| |||||||| || ||||| || || || ||||| || || || || | | | Sbjct 88765 TTCTTATCTAGACCGTAAGCTATAGCAGCTGCAGTGGGTTCGTTGATTATTCGTACAACG 88824 Query 7655 TTCAGGCCAGCAATAGTTGCCGCATCTTTCGTCGCTTGTCGTTGCGAATCGTTAAAGTAG 7714 || || |||||||||||| | |||||||| || ||||| ||||| | |||||| || || Sbjct 88825 TTGAGACCAGCAATAGTTCCAGCATCTTTTGTAGCTTGACGTTGTGCATCGTTGAAATAT 88884 Query 7715 GCCGGGACCGTTACGACCGCGTCCGTGACTTTCTTACCGAGATACGATTCCGCGATATCT 7774 || || || || || || |||| | | |||| || || ||||| || || ||||| || Sbjct 88885 GCAGGTACAGTAACTACAGCGTGCTTAACTTCTTTTCCTAGATAGGACTCAGCGATTTCC 88944 Query 7775 TTCATTTTGGTAAGAACCATCGATGAAATCTCTTCAG 7811 ||||||||| | ||||| | || || ||||||| Sbjct 88945 TTCATTTTGCCCAATACCATGGCGGATATTTCTTCAG 88981 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 635075979431880