Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyocaulus_20viviparus_20[genbank_20GCA_5F000816705.1_202015-03- 12] 7,157 sequences; 160,963,781 total letters Query= NC_015326.1 Length=346754 Score E Sequences producing significant alignments: (Bits) Value seq271 120 7e-22 seq9 120 7e-22 seq143 113 1e-19 >seq271 Length=165737 Score = 120 bits (132), Expect = 7e-22 Identities = 111/141 (79%), Gaps = 0/141 (0%) Strand=Plus/Minus Query 195000 ACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTTTG 195059 ||| |||||||| | |||||||||||||||||||||||||| || ||||| || ||| Sbjct 44783 ACCGGCGAAGATCAACCGTTGTTGGTCTGGAGGAATGCCTTCCTTATCTTGGATCTTTGC 44724 Query 195060 CTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGTCAA 195119 || || |||||||||||||| || ||||||||||| || | || ||||| || | Sbjct 44723 TTTAACATTCTCAATGGTGTCAGAGGCCTCCACTTCAAGAGTGATAGTTTTTCCAGTAAG 44664 Query 195120 AGTTTTTACGAACACTTGCAT 195140 ||| || ||||| | |||||| Sbjct 44663 AGTCTTCACGAAAATTTGCAT 44643 >seq9 Length=784367 Score = 120 bits (132), Expect = 7e-22 Identities = 114/146 (78%), Gaps = 0/146 (0%) Strand=Plus/Minus Query 194995 TGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATT 195054 || |||||||| || || | || || || ||||| || || |||||||||||||||||| Sbjct 113547 TGATTACCTGCAAAAATCAATCTCTGCTGATCTGGTGGGATTCCTTCTTTGTCTTGAATT 113488 Query 195055 TTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCT 195114 ||| ||| ||||||||||| ||||| ||| |||||||||||| || | || || || Sbjct 113487 TTTGCCTTTACGTTCTCAATCGTGTCTGAAGCTTCCACTTCAAGAGTGATAGTTTTACCA 113428 Query 195115 GTCAAAGTTTTTACGAACACTTGCAT 195140 || | |||||| || || | |||||| Sbjct 113427 GTTAGAGTTTTGACAAAAATTTGCAT 113402 Score = 113 bits (124), Expect = 1e-19 Identities = 112/145 (77%), Gaps = 0/145 (0%) Strand=Plus/Minus Query 194996 GCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTT 195055 || |||| || || || || || ||||| ||||| || || ||||||||||||||||||| Sbjct 113842 GCCTACCAGCAAAAATTAGCCGCTGTTGATCTGGTGGGATTCCTTCTTTGTCTTGAATTT 113783 Query 195056 TTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTG 195115 || || || |||||||| ||||| ||| |||||||||||| || | || || || | Sbjct 113782 TTGCTTTCACATTCTCAATTGTGTCTGAAGCTTCCACTTCAAGAGTGATAGTTTTACCAG 113723 Query 195116 TCAAAGTTTTTACGAACACTTGCAT 195140 |||| ||||| || || | ||||| Sbjct 113722 TCAAGGTTTTGACAAAAATCTGCAT 113698 Score = 95.1 bits (104), Expect = 3e-14 Identities = 108/145 (74%), Gaps = 0/145 (0%) Strand=Plus/Minus Query 194996 GCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTT 195055 || |||| ||||| || |||| |||||||||||| || || ||||| || ||||| |||| Sbjct 114617 GCATACCCGCGAAAATTAGTCTTTGTTGGTCTGGTGGGATACCTTCCTTATCTTGTATTT 114558 Query 195056 TTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTG 195115 | ||| || || ||||| ||||| || || ||||| | || | ||||||||||| Sbjct 114557 TCGTCTTCACATTTTCAATAGTGTCTGAGGCCTCAACTTCCAACGTGATCGTCTTTCCTG 114498 Query 195116 TCAAAGTTTTTACGAACACTTGCAT 195140 | | || || || || | |||||| Sbjct 114497 TTAGCGTCTTCACAAATATTTGCAT 114473 Score = 91.5 bits (100), Expect = 3e-13 Identities = 106/143 (74%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 194998 TTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTT 195057 ||||| || || || | || ||||| || || ||||| |||||||| |||||||||||| Sbjct 113234 TTACCAGCAAATATCAAGCGCTGTTGATCCGGTGGAATTCCTTCTTTATCTTGAATTTTT 113175 Query 195058 TGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGTC 195117 || || |||||||| ||||| || ||| || || || |||| |||||| || || Sbjct 113174 GCTTTCACATTCTCAATTGTGTCGGAGGCTTCAACCTCTAGTGTAATCGTCTTCCCGGTA 113115 Query 195118 AAAGTTTTTACGAACACTTGCAT 195140 | ||||| || || | ||||| Sbjct 113114 AGTGTTTTCACAAATATCTGCAT 113092 >seq143 Length=269893 Score = 113 bits (124), Expect = 1e-19 Identities = 115/149 (77%), Gaps = 1/149 (1%) Strand=Plus/Minus Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 |||| |||||| ||||| || | || || || |||||||| || ||||| ||||||||| Sbjct 138586 AGCT-CTTACCAGCGAATATCAAACGCTGCTGATCTGGAGGGATCCCTTCCTTGTCTTGA 138528 Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTT 195111 || || || || |||||||| |||||||| || ||||||||||| | ||||| Sbjct 138527 ATCTTAGCTTTCACATTCTCAATTGTGTCCGACGCCTCGACTTCAAGGGTTATTGTCTTC 138468 Query 195112 CCTGTCAAAGTTTTTACGAACACTTGCAT 195140 ||||||| ||| || ||||| | |||||| Sbjct 138467 CCTGTCAGAGTCTTCACGAAAATTTGCAT 138439 Score = 111 bits (122), Expect = 3e-19 Identities = 111/144 (77%), Gaps = 0/144 (0%) Strand=Plus/Minus Query 194997 CTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTT 195056 || ||||||||| || ||||| ||||| || |||||||||||||||||||||||||| || Sbjct 137618 CTGACCTGCGAAAATGAGTCGCTGTTGATCAGGAGGAATGCCTTCTTTGTCTTGAATCTT 137559 Query 195057 TTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGT 195116 || || |||||||| || || || ||| |||||||| || | ||||| ||||| Sbjct 137558 GGCTTTCACATTCTCAATAGTATCAGACGCTTCGACTTCAAGCGTGATTGTCTTCCCTGT 137499 Query 195117 CAAAGTTTTTACGAACACTTGCAT 195140 | ||| || || || | ||||| Sbjct 137498 GAGAGTCTTCACAAAGATCTGCAT 137475 Score = 107 bits (118), Expect = 4e-18 Identities = 110/144 (76%), Gaps = 0/144 (0%) Strand=Plus/Minus Query 194997 CTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTT 195056 || ||| |||||||| || ||||| ||||| ||||| || |||||||| ||||| || || Sbjct 138262 CTCACCAGCGAAGATCAGGCGTTGCTGGTCCGGAGGGATTCCTTCTTTATCTTGTATCTT 138203 Query 195057 TTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGT 195116 ||| || || ||||| ||||| || ||||| || ||||| | ||||||||||| Sbjct 138202 AGCCTTTACATTTTCAATCGTGTCAGATGCCTCCACCTCTAGGGTTATTGTCTTTCCTGT 138143 Query 195117 CAAAGTTTTTACGAACACTTGCAT 195140 || || ||||| || | |||||| Sbjct 138142 CAGCGTCTTTACAAAAATTTGCAT 138119 Score = 89.7 bits (98), Expect = 1e-12 Identities = 106/144 (74%), Gaps = 0/144 (0%) Strand=Plus/Minus Query 194997 CTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTT 195056 || ||| || || |||||||||||||| ||||||||||| ||||| || || ||||| || Sbjct 137296 CTCACCAGCAAAAATAAGTCGTTGTTGATCTGGAGGAATACCTTCCTTATCCTGAATCTT 137237 Query 195057 TTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGT 195116 || || ||||| || ||||| || ||| || || | ||| | ||||| || || Sbjct 137236 GGCTTTCACATTCTCGATTGTGTCGGACGCTTCGACCTCTAAGGTGATTGTCTTGCCAGT 137177 Query 195117 CAAAGTTTTTACGAACACTTGCAT 195140 | ||||| ||||| | ||||| Sbjct 137176 GAGCGTTTTCACGAAAATCTGCAT 137153 Score = 87.8 bits (96), Expect = 4e-12 Identities = 59/66 (89%), Gaps = 0/66 (0%) Strand=Plus/Minus Query 194938 TGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTGC 194997 ||||||||||||||||||||||| |||||||||| ||||||| |||||||| ||||| Sbjct 137449 TGAAGAGTGGACTCTTTTTGAATGTTGTAATCGGAGAGAGTTCGGCCATCTTCAAGCTGT 137390 Query 194998 TTACCT 195003 |||||| Sbjct 137389 TTACCT 137384 Score = 84.2 bits (92), Expect = 5e-11 Identities = 70/86 (81%), Gaps = 0/86 (0%) Strand=Plus/Minus Query 194931 AACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTC 194990 ||| | ||||||||| |||||||||||||||||||| |||| ||||| | |||||| || Sbjct 137783 AACCAAGTGAAGAGTCGACTCTTTTTGAATATTGTAGTCGGAGAGAGTGCGCCCATCCTC 137724 Query 194991 GAGCTGCTTACCTGCGAAGATAAGTC 195016 |||||||| ||| | || | || || Sbjct 137723 AAGCTGCTTTCCTACAAAAAAAAATC 137698 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1109379861577419