Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyocaulus_20viviparus_20[genbank_20GCA_5F000816705.1_202015-03- 12] 7,157 sequences; 160,963,781 total letters Query= NC_015960.1 Length=175699 Score E Sequences producing significant alignments: (Bits) Value seq919 152 6e-32 >seq919 Length=24097 Score = 152 bits (168), Expect = 6e-32 Identities = 300/439 (68%), Gaps = 16/439 (4%) Strand=Plus/Minus Query 48306 ATATCAGCATGCCATGGTTCTAAATATATTGCCATTACACCTGGTCGTTTATTACCTCCT 48365 || || ||||||||||| |||||||| ||||| | | | ||||||| ||| || || ||| Sbjct 20696 ATGTCGGCATGCCATGGCTCTAAATAAATTGCAAATGCTCCTGGTCTTTTGTTTCCACCT 20637 Query 48366 TGATCTATATATCTGGCAGTATTGTTATAAACTCTTAACATTGGGACAATACCATTTGAT 48425 ||||| | ||||| ||||||||||| || || | | |||||| || | |||||| || Sbjct 20636 TGATCAACATATCGAGCAGTATTGTTGTATACACGCAGCATTGGAACCAAACCATTGGAA 20577 Query 48426 ATACCATTGGTTCCCGAAATATAACTTCCACTAGCTCTTATATTA--CTAATTGAAATAC 48483 ||||||| || || ||| | ||| |||| || || ||| | ||| || | Sbjct 20576 GTACCATTAGTACCGCCAATCAACGAACCAGTAGCCCTAATCTTATGCACATTCAA--GC 20519 Query 48484 CTATACCACCTGCCATTTTAGATATTAGAGCACACCGTTTAAGGGTATCATAAATTCCTT 48543 | || ||||| || |||| || || | ||||||| | || || |||||||| || || Sbjct 20518 CGATTCCACCGGCACTTTTTGAGATCAAAGCACACTGCTTTAGCGTATCATATATCCCCG 20459 Query 48544 CTATACTATCATCTATCATATTTAATAGAAAACAACTAGACATTTGCGGATGACAAGTTC 48603 | || ||| || ||||| | || | || || ||| | ||| || | |||| Sbjct 20458 CAATGGAATCTTCACTCATAGTCAACAAGAAGCACGAAGAAAGTTGTGGCCAATTTGTTC 20399 Query 48604 CTGAATTAAATAATGTTGGAGATGCATGAATAAACCAT--TTCTCTGATAACAATTTATA 48661 ||| ||| || | ||||| || |||||| | || || ||| || || || || || Sbjct 20398 CTGCATTGAACAGCGTTGGTGACGCATGAGTGAAATATCGTTCACTCAT--CAGATTGTA 20341 Query 48662 TGTTTCAATAACAGAATCTATATC----CCATTGATGTATACCTATAGATACACGCATTA 48717 |||||||| | | || ||||| |||| |||| ||||| | |||||||| | Sbjct 20340 GGTTTCAATTGCCGCGTCGATATCTTCACCATGGATG----CCTATTGCAACACGCATGA 20285 Query 48718 ACATATATTGAGGTCTTTC 48736 ||||| || || | ||| Sbjct 20284 GCATATGCTGTGGCCGTTC 20266 Score = 91.5 bits (100), Expect = 2e-13 Identities = 104/140 (74%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 47310 AGATGAGGATTAACAATTTGAAATTCTCCAGATAGTACTCTACGGCTATATATATTACTT 47369 || || || || ||||||||||| || || || || ||||| | ||||||||| || Sbjct 22282 AGGTGTGGGTTTACAATTTGAAAATCACCCGAAAGCACTCTTCTGCTATATATGTTCGAA 22223 Query 47370 GTATATGGTTCTATAGATTCATTATTTCCAAAAATTTGAGCAGTTGATGCTGTAGGCATG 47429 || || ||||| | ||||| ||||| || |||||||| || ||||| || || ||||| Sbjct 22222 GTGTACGGTTCAACTGATTCGTTATTACCCAAAATTTGGGCTGTTGAAGCAGTTGGCATT 22163 Query 47430 GATGCAACTAATAAGCTATT 47449 | ||||| || || || || Sbjct 22162 GGGGCAACCAACAAACTGTT 22143 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 562058512341480