Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyocaulus_20viviparus_20[genbank_20GCA_5F000816705.1_202015-03- 12] 7,157 sequences; 160,963,781 total letters Query= NC_016072.1 Length=1259197 Score E Sequences producing significant alignments: (Bits) Value seq216 141 7e-28 seq168 136 3e-26 seq9 116 3e-20 seq10 109 4e-18 seq271 98.7 8e-15 >seq216 Length=210855 Score = 141 bits (156), Expect = 7e-28 Identities = 140/179 (78%), Gaps = 4/179 (2%) Strand=Plus/Minus Query 550396 GGATGCAGTAATAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGA 550455 |||||| || || || || || || || || || || || || ||||||||||||||||| Sbjct 130386 GGATGCTGTCATTACGGTCCCTGCCTACTTCAACGATTCGCAGCGTCAAGCTACTAAAGA 130327 Query 550456 TGCTGGACGTATTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGC 550515 ||| ||| ||| || || |||||||||||||| || || |||||||||||||||||||| Sbjct 130326 TGCGGGAGCTATCGCAGGGCTTAATGTTCTTCGAATAATTAATGAACCTACTGCTGCTGC 130267 Query 550516 ACTTGCATATGGACTTGATAAACATAATGATCA--AGAACTTAATGTACTCATCTTTGA 550572 | |||| || || || ||||| || || || ||||| ||| || ||||| ||||| Sbjct 130266 AATTGCTTACGGGCTAGATAA--GAAAGGAACAGGAGAACGTAACGTCCTCATTTTTGA 130210 Score = 122 bits (134), Expect = 7e-22 Identities = 388/593 (65%), Gaps = 14/593 (2%) Strand=Plus/Minus Query 551962 CTATTGAAGTAGATTCATTATTTGAGGGAATTGATTATAATACGCCTATTTCGAGGGCCA 552021 |||| || | ||||| || ||||| |||||||||| | || || | | || Sbjct 129964 CTATCGAGATTGATTCGTTGTTTGAAGGAATTGATTTCTACACTAACATCACCCGTGCTC 129905 Query 552022 AATTTGAAGATATTTGTTCTGATCTCTTTAGAAAAACAATTGAACCAGTAGAACAAGTTT 552081 |||||||| | ||| |||| | || | || || || || |||||| |||| Sbjct 129904 GCTTTGAAGAGCTATGTGCTGACTTATTCCGTTCTACTATGGATCCTGTAGAA-AAGTCG 129846 Query 552082 -TAAGAGATTCAAAGATTGATAAATCCAAAGTACATGAAATTGTGCTTGTTGGTGGATCT 552140 | |||||| | || || || ||| |||| |||| ||||| |||||||||||||| Sbjct 129845 CTTAGAGATGCTAAAATGGACAAAAGTCAAGTCAATGATATTGTCCTTGTTGGTGGATCA 129786 Query 552141 ACAAGAATTCCTAAAATTCGCGAAATGTTAAGTTCT---TATTTCAATGGTAAAAAATTA 552197 ||| | || |||||| | | ||| | | |||| | ||| || ||| | ||| Sbjct 129785 ACACGTATACCTAAAGTGC---AAAAGCTTCTTTCTGACTTGTTCTCAGGGAAAGAGTTA 129729 Query 552198 AATGAAAGTGTTAATCCAGATGAGGCTGTTGCCTATGGTGCCGCAATTCAAGCAGCTATT 552257 || || |||| || ||||| ||||| || || || || || | ||||| |||||| Sbjct 129728 AACAAATCGATTAACCCTGATGAAGCTGTGGCGTACGGAGCTGCTGTGCAAGCCGCTATT 129669 Query 552258 CTTTCTG--GACAAACTGATGAAAAACTACAAAATATTGTACTTGTAGATGTTACTCCTC 552315 || || | ||||| | ||| | || || | | || | ||||| |||||| Sbjct 129668 CTCTCAGGTGACAAGTCG--GAAGCTGTCCAGGATCTCCTTCTACTTGATGTGGCTCCTC 129611 Query 552316 TATCTCTTGGTTTAGAAACAGTTGGAGGTATTATGACTAATCTTATCGATAGAAATACTA 552375 | || || ||| | || || | ||||| |||||||| ||| || | || ||||||| Sbjct 129610 TTTCACTGGGTATTGAGACGGCAGGAGGCGTTATGACTGCTCTGATAAAGAGGAATACTA 129551 Query 552376 CTATTCC-TTGTAAAAAATCTCGTGTATTTTCTACGTATTCAGATAATCAAACTGCTGTT 552434 | || || | | | | | | | || ||||||| || ||||| || ||| || Sbjct 129550 CCATCCCGACGAAGACTAGCCAGACT-TTCACTACGTACTCTGATAACCAGCCTGGAGTA 129492 Query 552435 ACAATTCAAATTTTTGAAGGAGAAAGAAAATTCACTAAAGATAATAATCAACTTGGTACT 552494 || ||| |||| || |||||| || | | || |||||||| || | || || | Sbjct 129491 CTGATCCAAGTTTTCGAGGGAGAACGAGCAATGACCAAAGATAACAACCTTCTAGGGAAG 129432 Query 552495 TTTAATTTAGAAGGTATTCCTCCTGCTCCTCGTGGAGTACCGCAAATTGAAGT 552547 ||| | ||| || || || ||||| || || ||||| |||||||| || || Sbjct 129431 TTTGAATTATCTGGCATCCCGCCTGCGCCACGCGGAGTTCCGCAAATCGAGGT 129379 >seq168 Length=259614 Score = 136 bits (150), Expect = 3e-26 Identities = 166/223 (74%), Gaps = 4/223 (2%) Strand=Plus/Minus Query 550317 TTTCAC--CAGAACAAATTTCATCTATGGTTTTAATGAAAATGAAACAAACAGCC-AGTG 550373 |||||| | ||| |||| || | ||||| || |||||||| ||| || ||| Sbjct 88989 TTTCACTCCTGAAGAAATATCCGCCATGGTATTGGGCAAAATGAAGGAAATCGCTGAGTC 88930 Query 550374 CTTTTGTTGGTCAAGAAGTTACGGATGCAGTAATAACTGTACCAGCATATTTTAATGACT 550433 || | | || ||||||||| | | || ||| | |||||||| |||||||| || || Sbjct 88929 CTATC-TAGGAAAAGAAGTTAAGCACGCTGTAGTTACTGTACCTGCATATTTCAACGATG 88871 Query 550434 CACAACGTCAAGCTACTAAAGATGCTGGACGTATTGCTGGACTTAATGTTCTTCGTATTA 550493 |||||||||||||||| |||||||||||| ||||||||| || || ||| | || || | Sbjct 88870 CACAACGTCAAGCTACAAAAGATGCTGGAACTATTGCTGGTCTCAACGTTGTACGAATAA 88811 Query 550494 TCAATGAACCTACTGCTGCTGCACTTGCATATGGACTTGATAA 550536 |||| ||||| ||||| ||||| | || || || || ||||| Sbjct 88810 TCAACGAACCCACTGCAGCTGCTATAGCTTACGGTCTAGATAA 88768 Score = 98.7 bits (108), Expect = 8e-15 Identities = 107/142 (75%), Gaps = 0/142 (0%) Strand=Plus/Plus Query 361703 AGACCATAAGCTAATGAAGCAGCTGTTGGTTCGTTAATTATTTTAATAACATTGAGTCCC 361762 ||||| ||||||| | ||| || || |||||||| |||||| | ||| ||||| || Sbjct 88774 AGACCGTAAGCTATAGCAGCTGCAGTGGGTTCGTTGATTATTCGTACAACGTTGAGACCA 88833 Query 361763 GCTATTTTTGATGCATCTAAAGTGGCTTGACGTTGTGCATCATTAAAATATGCAGGAACA 361822 || || || |||||| || ||||||||||||||||| || ||||||||||| ||| Sbjct 88834 GCAATAGTTCCAGCATCTTTTGTAGCTTGACGTTGTGCATCGTTGAAATATGCAGGTACA 88893 Query 361823 GTAATCACTGCTTTTTCAACTT 361844 |||| || || | | ||||| Sbjct 88894 GTAACTACAGCGTGCTTAACTT 88915 >seq9 Length=784367 Score = 116 bits (128), Expect = 3e-20 Identities = 116/148 (78%), Gaps = 2/148 (1%) Strand=Plus/Minus Query 563328 TTGTTTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCTTCTTTATCTTGAAT 563387 ||| || || |||||||| | ||| |||||||| || || ||||||||||| |||||||| Sbjct 113548 TTGATTACCTGCAAAAATCAATCTCTGCTGATCTGGTGGGATTCCTTCTTTGTCTTGAAT 113489 Query 563388 TTTTTGTTTTACTGCCTCAATTGTATCAGTGTGAGTACA-TTCGAGAGTAACAGTTTTAC 563446 |||| ||||| |||||| || || | | | || ||| ||||| | |||||||| Sbjct 113488 TTTTGCCTTTACGTTCTCAATCGTGTCTG-AAGCTTCCACTTCAAGAGTGATAGTTTTAC 113430 Query 563447 CAGTAAGAGTTTTAACGAAAATTTGCAT 563474 |||| |||||||| || ||||||||||| Sbjct 113429 CAGTTAGAGTTTTGACAAAAATTTGCAT 113402 Score = 95.1 bits (104), Expect = 1e-13 Identities = 107/141 (76%), Gaps = 2/141 (1%) Strand=Plus/Minus Query 563335 CCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCTTCTTTATCTTGAATTTTTTGT 563394 || |||||||| || | || ||||| || || ||||||||||| |||||||||||| | Sbjct 113837 CCAGCAAAAATTAGCCGCTGTTGATCTGGTGGGATTCCTTCTTTGTCTTGAATTTTTGCT 113778 Query 563395 TTTACTGCCTCAATTGTATCAGTGTGAGTACA-TTCGAGAGTAACAGTTTTACCAGTAAG 563453 || || ||||||||| || | | | || ||| ||||| | |||||||||||| | Sbjct 113777 TTCACATTCTCAATTGTGTCTG-AAGCTTCCACTTCAAGAGTGATAGTTTTACCAGTCAA 113719 Query 563454 AGTTTTAACGAAAATTTGCAT 563474 ||||| || ||||| ||||| Sbjct 113718 GGTTTTGACAAAAATCTGCAT 113698 >seq10 Length=781406 Score = 109 bits (120), Expect = 4e-18 Identities = 129/171 (75%), Gaps = 8/171 (5%) Strand=Plus/Minus Query 368794 GTTTTGGATTGCTGGTTTGAATCAGGTTCTATGCCTTATGGTCAAATACATTATCCATTT 368853 ||||| |||||||||||||| || || || |||||||||||||||| |||||||||||| Sbjct 551165 GTTTTCGATTGCTGGTTTGAGTCCGGCTCAATGCCTTATGGTCAAAACCATTATCCATTT 551106 Query 368854 GATAAC-GCAAAATACTTTGATAATGATAAAGATTATGTGGCTGATTTTGTAACAGAATC 368912 || ||| | || || |||| | |||| ||| | ||| ||||| | | ||| Sbjct 551105 GAAAACAGGAAGGTA-TTTG---AAGATA---ATTTTCCGGCGGATTTCATTGCGGAAGG 551053 Query 368913 AATTGATCAAACACGTGGTTGGTTTTATACCCTATTAGTATTATCCACAGC 368963 ||| |||||||| | || ||||| |||||| | | ||||||||||| || Sbjct 551052 AATCGATCAAACGAGAGGATGGTTCTATACCTTGCTTGTATTATCCACTGC 551002 >seq271 Length=165737 Score = 98.7 bits (108), Expect = 8e-15 Identities = 108/141 (77%), Gaps = 2/141 (1%) Strand=Plus/Minus Query 563335 CCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCTTCTTTATCTTGAATTTTTTGT 563394 ||||| || || | | ||| || || |||||||| ||||| |||||||| || ||| | Sbjct 44782 CCGGCGAAGATCAACCGTTGTTGGTCTGGAGGAATGCCTTCCTTATCTTGGATCTTTGCT 44723 Query 563395 TTTACTGCCTCAATTGTATCAGTGTGAGTACA-TTCGAGAGTAACAGTTTTACCAGTAAG 563453 || || |||||| || |||| | | | || ||| ||||| | |||||| |||||||| Sbjct 44722 TTAACATTCTCAATGGTGTCAGAG-GCCTCCACTTCAAGAGTGATAGTTTTTCCAGTAAG 44664 Query 563454 AGTTTTAACGAAAATTTGCAT 563474 ||| || |||||||||||||| Sbjct 44663 AGTCTTCACGAAAATTTGCAT 44643 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 4028917505561930