Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyocaulus_20viviparus_20[genbank_20GCA_5F000816705.1_202015-03- 12] 7,157 sequences; 160,963,781 total letters Query= NC_018504.1 Length=123876 Score E Sequences producing significant alignments: (Bits) Value seq9 134 1e-26 seq143 116 3e-21 seq271 105 5e-18 >seq9 Length=784367 Score = 134 bits (148), Expect = 1e-26 Identities = 116/144 (81%), Gaps = 0/144 (0%) Strand=Plus/Minus Query 101327 TTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTTT 101386 ||||| ||||||||||| ||||||||||| || ||||| ||||||||||||||||||||| Sbjct 113234 TTACCAGCAAATATCAAGCGCTGTTGATCCGGTGGAATTCCTTCTTTATCTTGAATTTTT 113175 Query 101387 TGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGTT 101446 ||| ||| | || | ||||| || | ||| || || || || | ||| || ||||| Sbjct 113174 GCTTTCACATTCTCAATTGTGTCGGAGGCTTCAACCTCTAGTGTAATCGTCTTCCCGGTA 113115 Query 101447 AAAGTTTTTACAAATATCTGCATG 101470 | ||||| ||||||||||||||| Sbjct 113114 AGTGTTTTCACAAATATCTGCATG 113091 Score = 132 bits (146), Expect = 4e-26 Identities = 126/161 (78%), Gaps = 0/161 (0%) Strand=Plus/Minus Query 101322 ATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAA 101381 |||| ||||||||||| ||||| | ||| ||||| || || || |||||||| ||||||| Sbjct 113549 ATTGATTACCTGCAAAAATCAATCTCTGCTGATCTGGTGGGATTCCTTCTTTGTCTTGAA 113490 Query 101382 TTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGC 101441 ||||| ||||| | || | ||||| || | ||||||||||||||||| ||||| | Sbjct 113489 TTTTTGCCTTTACGTTCTCAATCGTGTCTGAAGCTTCCACTTCAAGAGTGATAGTTTTAC 113430 Query 101442 CGGTTAAAGTTTTTACAAATATCTGCATGGTTACGCGAAGA 101482 | |||| |||||| ||||| || ||||| | | |||||| Sbjct 113429 CAGTTAGAGTTTTGACAAAAATTTGCATCCCTCCACGAAGA 113389 Score = 127 bits (140), Expect = 2e-24 Identities = 123/158 (78%), Gaps = 0/158 (0%) Strand=Plus/Minus Query 101325 GCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTT 101384 || |||| ||||| || | ||||||||||| || || || |||||||| |||||||||| Sbjct 113842 GCCTACCAGCAAAAATTAGCCGCTGTTGATCTGGTGGGATTCCTTCTTTGTCTTGAATTT 113783 Query 101385 TTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGG 101444 || ||| ||| | || | ||||| || | ||||||||||||||||| ||||| || | Sbjct 113782 TTGCTTTCACATTCTCAATTGTGTCTGAAGCTTCCACTTCAAGAGTGATAGTTTTACCAG 113723 Query 101445 TTAAAGTTTTTACAAATATCTGCATGGTTACGCGAAGA 101482 | || ||||| ||||| |||||||| | | |||||| Sbjct 113722 TCAAGGTTTTGACAAAAATCTGCATCCCTCCACGAAGA 113685 >seq143 Length=269893 Score = 116 bits (128), Expect = 3e-21 Identities = 112/144 (78%), Gaps = 0/144 (0%) Strand=Plus/Minus Query 101326 CTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTT 101385 || |||||| || || | ||||||||||| || |||||||||||||| |||||||| || Sbjct 137618 CTGACCTGCGAAAATGAGTCGCTGTTGATCAGGAGGAATGCCTTCTTTGTCTTGAATCTT 137559 Query 101386 TTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGT 101445 ||| ||| | || | ||| ||||||| ||| |||||||| |||| || || || || Sbjct 137558 GGCTTTCACATTCTCAATAGTATCAGACGCTTCGACTTCAAGCGTGATTGTCTTCCCTGT 137499 Query 101446 TAAAGTTTTTACAAATATCTGCAT 101469 | ||| || ||||| |||||||| Sbjct 137498 GAGAGTCTTCACAAAGATCTGCAT 137475 Score = 93.3 bits (102), Expect = 3e-14 Identities = 107/144 (74%), Gaps = 0/144 (0%) Strand=Plus/Minus Query 101326 CTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTT 101385 |||||| || |||||||||||||| ||||| || || || ||||| || |||||||| || Sbjct 138582 CTTACCAGCGAATATCAAACGCTGCTGATCTGGAGGGATCCCTTCCTTGTCTTGAATCTT 138523 Query 101386 TTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGT 101445 ||| ||| | || | ||||| |||| || |||||||| || | || || || || Sbjct 138522 AGCTTTCACATTCTCAATTGTGTCCGACGCCTCGACTTCAAGGGTTATTGTCTTCCCTGT 138463 Query 101446 TAAAGTTTTTACAAATATCTGCAT 101469 | ||| || || || || ||||| Sbjct 138462 CAGAGTCTTCACGAAAATTTGCAT 138439 >seq271 Length=165737 Score = 105 bits (116), Expect = 5e-18 Identities = 108/141 (77%), Gaps = 0/141 (0%) Strand=Plus/Minus Query 101329 ACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTTTTG 101388 ||| || || ||||| || ||||| || || ||||||||||| |||||||| || ||| Sbjct 44783 ACCGGCGAAGATCAACCGTTGTTGGTCTGGAGGAATGCCTTCCTTATCTTGGATCTTTGC 44724 Query 101389 TTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGTTAA 101448 ||| ||| | || | |||||||| | |||||||||||||||| ||||| || || | Sbjct 44723 TTTAACATTCTCAATGGTGTCAGAGGCCTCCACTTCAAGAGTGATAGTTTTTCCAGTAAG 44664 Query 101449 AGTTTTTACAAATATCTGCAT 101469 ||| || || || || ||||| Sbjct 44663 AGTCTTCACGAAAATTTGCAT 44643 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 396243834245049