Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyocaulus_20viviparus_20[genbank_20GCA_5F000816705.1_202015-03- 12] 7,157 sequences; 160,963,781 total letters Query= NC_020104.1 Length=1021348 Score E Sequences producing significant alignments: (Bits) Value seq216 187 2e-41 seq168 159 2e-33 seq143 98.7 6e-15 seq271 95.1 8e-14 seq9 86.0 4e-11 >seq216 Length=210855 Score = 187 bits (206), Expect = 2e-41 Identities = 535/802 (67%), Gaps = 22/802 (3%) Strand=Plus/Minus Query 475340 GAAGATGGTCTTTTCTCTGTAAGAGCAACAGCTGGAGATTCACATCTTGGTGGTGAAGAT 475399 |||||||| ||||| |||| | || |||||||| | |||||||| || || || Sbjct 130169 GAAGATGGCATTTTCGAAGTAAAGTCGACCGCTGGAGACACGCATCTTGGAGGAGAGGAC 130110 Query 475400 TTTGATAATAGACTTGTAT--CATGGTGTGTTGAAGATTTCAAGAGGAAAAATAAAGTTG 475457 || ||||| ||| | ||| ||| ||| | || ||||| || ||| |||| | Sbjct 130109 TTCGATAACAGAATGGTAAACCATTTCGTGGCGGAG--TTCAAAAGAAAACATAAGAAGG 130052 Query 475458 ATCTTTCAACATC--TGCTAAAGCATTAAGACGTCTTA-GAACTGCTTGTGAACGTGCTA 475514 || || |||| | || || | ||||| |||| | ||||| ||||| || |||| Sbjct 130051 AT--TTGAACAGTAATCCTCGCGCTCTGAGACG-CTTACGTACTGCCTGTGAGCGAGCTA 129995 Query 475515 AGCGAGCTCTTTCTTCTGCTACTCAAACTACTGTTGAAGTTGATTCTCTTTTTGAAGGAA 475574 |||| | | || || | | || | || | || ||||||| | |||||||||| Sbjct 129994 AGCGCACGTTGTCATCGTCATCACAGGCGTCTATCGAGATTGATTCGTTGTTTGAAGGAA 129935 Query 475575 TTGATTATAATACTCTTATTACAAGGGCTAAATTTGAAGATATTTGTTCTGATCTCTTTA 475634 |||||| | ||| || || | ||| |||||||| | ||| |||| | || Sbjct 129934 TTGATTTCTACACTAACATCACCCGTGCTCGCTTTGAAGAGCTATGTGCTGACTTATTCC 129875 Query 475635 GAAAAACAATTGAACCCGTTGAACAAGT-TCTCAGAGATTCTAAACTTGACAAATCACAA 475693 | || || || || || ||| |||| || |||||| ||||| | |||||| ||| Sbjct 129874 GTTCTACTATGGATCCTGTAGAA-AAGTCGCTTAGAGATGCTAAAATGGACAAAAGTCAA 129816 Query 475694 GTCCATGAAATTGTTCTTGTAGGAGGTTCAACAAGAATTCCAAAAATAAGAGAAATGCTT 475753 ||| |||| ||||| ||||| || || |||||| | || || ||| | | | | ||| Sbjct 129815 GTCAATGATATTGTCCTTGTTGGTGGATCAACACGTATACCTAAAGTGCAAAAGCTTCTT 129756 Query 475754 TC-ATCATATTTTAATGGTAAAAAGTTAAATGAAAGTGTAAATCCTGATGAAGCTGTTGC 475812 || | | || | | || ||| ||||||| || | || |||||||||||||| || Sbjct 129755 TCTGACTTGTTCTCA-GGGAAAGAGTTAAACAAATCGATTAACCCTGATGAAGCTGTGGC 129697 Query 475813 ATATGGAGCTGCTGTCCAAGCAGCTATTTTATCAGGTCAATCAGACGAGAAAC--TAAAT 475870 || ||||||||||| ||||| |||||| | |||||| | || || ||| | | | Sbjct 129696 GTACGGAGCTGCTGTGCAAGCCGCTATTCTCTCAGGT-GACAAGTCG-GAAGCTGTCCAG 129639 Query 475871 AATATTGTACTTGTTGACGTAACTCCACTTTCATTAGGTCTTGAAACAGTTGGAGGGATT 475930 || | | || |||| || |||| |||||| | ||| |||| || | ||||| || Sbjct 129638 GATCTCCTTCTACTTGATGTGGCTCCTCTTTCACTGGGTATTGAGACGGCAGGAGGCGTT 129579 Query 475931 ATGACTAATCTTATTGACAGAAATACTCCTATCCC-ATGCAAAAAATCAAAAGTATTTTC 475989 |||||| ||| || | || |||||| | ||||| | | | | | | | | | || | Sbjct 129578 ATGACTGCTCTGATAAAGAGGAATACTACCATCCCGACGAAGACTAGCCAGACT-TTCAC 129520 Query 475990 CACTTATTCTGATAATCAAACAACTGTAACCATCCAAATCTTTGAAGGTGAAAGAAAATT 476049 || || |||||||| || | ||| |||||| | || || || ||| || | | Sbjct 129519 TACGTACTCTGATAACCAGCCTGGAGTACTGATCCAAGTTTTCGAGGGAGAACGAGCAAT 129460 Query 476050 CACTAAAGATAATAACAAACT-TGGAACTTTTAATCTTGAAGGTATTCCTCCTGCTCCCA 476108 || |||||||| ||| || |||| ||| ||| | || || || ||||| || Sbjct 129459 GACCAAAGATAACAACCTTCTAGGGAAGTTTGAAT-TATCTGGCATCCCGCCTGCGCCAC 129401 Query 476109 GAGGAGTTCCTCAAATTGAAGT 476130 | |||||||| ||||| || || Sbjct 129400 GCGGAGTTCCGCAAATCGAGGT 129379 Score = 127 bits (140), Expect = 1e-23 Identities = 114/143 (80%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 474734 GATGCAGTAATTACTGTTCCAGCATATTTTAATGATTCTCAACGTCAAGCAACTAAAGAT 474793 ||||| || ||||| || || || || || || ||||| || |||||||| ||||||||| Sbjct 130385 GATGCTGTCATTACGGTCCCTGCCTACTTCAACGATTCGCAGCGTCAAGCTACTAAAGAT 130326 Query 474794 GCGGGAAGAATTGCAGGTCTTAATGTTTTACGTATTATTAATGAACCAACAGCAGCCGCA 474853 |||||| || ||||| ||||||||| | || || ||||||||||| || || || ||| Sbjct 130325 GCGGGAGCTATCGCAGGGCTTAATGTTCTTCGAATAATTAATGAACCTACTGCTGCTGCA 130266 Query 474854 CTTGCTTATGGTCTTGATAAGAA 474876 ||||||| || || |||||||| Sbjct 130265 ATTGCTTACGGGCTAGATAAGAA 130243 >seq168 Length=259614 Score = 159 bits (176), Expect = 2e-33 Identities = 173/226 (77%), Gaps = 4/226 (2%) Strand=Plus/Minus Query 474654 TTTCAC--CGGAACAAATTTCTTCAATGGTTTTAGCCAAAATGAAACAAACCGC-GAGCT 474710 |||||| | ||| |||| || | ||||| || | ||||||||| ||| ||| ||| | Sbjct 88989 TTTCACTCCTGAAGAAATATCCGCCATGGTATTGGGCAAAATGAAGGAAATCGCTGAG-T 88931 Query 474711 CATATCTTGGACAAGAAGTAACTGATGCAGTAATTACTGTTCCAGCATATTTTAATGATT 474770 | ||||| ||| ||||||| | | || ||| ||||||| || |||||||| || ||| Sbjct 88930 CCTATCTAGGAAAAGAAGTTAAGCACGCTGTAGTTACTGTACCTGCATATTTCAACGATG 88871 Query 474771 CTCAACGTCAAGCAACTAAAGATGCGGGAAGAATTGCAGGTCTTAATGTTTTACGTATTA 474830 | ||||||||||| || |||||||| |||| ||||| ||||| || ||| |||| || | Sbjct 88870 CACAACGTCAAGCTACAAAAGATGCTGGAACTATTGCTGGTCTCAACGTTGTACGAATAA 88811 Query 474831 TTAATGAACCAACAGCAGCCGCACTTGCTTATGGTCTTGATAAGAA 474876 | || ||||| || ||||| || | ||||| ||||| |||||||| Sbjct 88810 TCAACGAACCCACTGCAGCTGCTATAGCTTACGGTCTAGATAAGAA 88765 >seq143 Length=269893 Score = 98.7 bits (108), Expect = 6e-15 Identities = 104/137 (76%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 480633 CCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCTTCCTTGTCTTGAATCTTTTGT 480692 || || ||||| || || ||||||||||||||||| ||||| |||||||||||||| | Sbjct 137614 CCTGCGAAAATGAGTCGCTGTTGATCAGGAGGAATGCCTTCTTTGTCTTGAATCTTGGCT 137555 Query 480693 TTGACAGCTTCAATAGTATCAGTGTGTGAAGTTTCAAGGGTAATAGTTTTACCGGTGAGA 480752 || ||| ||||||||||||| | |||||| || || || || || |||||| Sbjct 137554 TTCACATTCTCAATAGTATCAGACGCTTCGACTTCAAGCGTGATTGTCTTCCCTGTGAGA 137495 Query 480753 GTCTTAACGAAAATTTG 480769 ||||| || || || || Sbjct 137494 GTCTTCACAAAGATCTG 137478 Score = 91.5 bits (100), Expect = 1e-12 Identities = 107/142 (75%), Gaps = 2/142 (1%) Strand=Plus/Minus Query 480629 CTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCTTCCTTGTCTTGAATCTT 480688 ||| ||||| || || | ||| || ||||| ||||| || |||||||||||||||||||| Sbjct 138582 CTTACCAGCGAATATCAAACGCTGCTGATCTGGAGGGATCCCTTCCTTGTCTTGAATCTT 138523 Query 480689 TTGTTTGACAGCTTCAATAGTATCAG-TGTGTGAAGTTTCAAGGGTAATAGTTTTACCGG 480747 ||| ||| ||||| || || | | | | ||||||||| || || || || | Sbjct 138522 AGCTTTCACATTCTCAATTGTGTCCGACGCCTCGA-CTTCAAGGGTTATTGTCTTCCCTG 138464 Query 480748 TGAGAGTCTTAACGAAAATTTG 480769 | |||||||| ||||||||||| Sbjct 138463 TCAGAGTCTTCACGAAAATTTG 138442 Score = 89.7 bits (98), Expect = 3e-12 Identities = 104/138 (75%), Gaps = 2/138 (1%) Strand=Plus/Minus Query 480633 CCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCTTCCTTGTCTTGAATCTTTTGT 480692 |||||||| |||||||| || ||||||||||||||||||||||||||||| ||||| Sbjct 137941 CCAGCAAAGATAAGACGCTGCTGATCAGGAGGAATTCCTTCCTTGTCTTGGATCTTGGCC 137882 Query 480693 TTGACAGCTTCAATAGTATCAG-TGTGTGAAGTTTCAAGGGTAATAGTTTTACCGGTGAG 480751 || || || || ||||||| || | || || || || || || || || || | Sbjct 137881 TTAACGTTCTCGATGGTATCAGATGCCTCAA-CCTCCAGTGTGATCGTCTTCCCTGTTAA 137823 Query 480752 AGTCTTAACGAAAATTTG 480769 |||||||| ||||| || Sbjct 137822 TGTCTTAACAAAAATCTG 137805 >seq271 Length=165737 Score = 95.1 bits (104), Expect = 8e-14 Identities = 94/122 (77%), Gaps = 0/122 (0%) Strand=Plus/Minus Query 480648 CGTTGTTGATCAGGAGGAATTCCTTCCTTGTCTTGAATCTTTTGTTTGACAGCTTCAATA 480707 |||||||| || |||||||| |||||||| ||||| |||||| ||| ||| ||||| Sbjct 44767 CGTTGTTGGTCTGGAGGAATGCCTTCCTTATCTTGGATCTTTGCTTTAACATTCTCAATG 44708 Query 480708 GTATCAGTGTGTGAAGTTTCAAGGGTAATAGTTTTACCGGTGAGAGTCTTAACGAAAATT 480767 || |||| | |||||| || |||||||| || || |||||||| ||||||||| Sbjct 44707 GTGTCAGAGGCCTCCACTTCAAGAGTGATAGTTTTTCCAGTAAGAGTCTTCACGAAAATT 44648 Query 480768 TG 480769 || Sbjct 44647 TG 44646 >seq9 Length=784367 Score = 86.0 bits (94), Expect = 4e-11 Identities = 101/137 (74%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 480633 CCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCTTCCTTGTCTTGAATCTTTTGT 480692 ||||||||||| || || |||||||| || || |||||||| ||||||||||| ||| | Sbjct 113837 CCAGCAAAAATTAGCCGCTGTTGATCTGGTGGGATTCCTTCTTTGTCTTGAATTTTTGCT 113778 Query 480693 TTGACAGCTTCAATAGTATCAGTGTGTGAAGTTTCAAGGGTAATAGTTTTACCGGTGAGA 480752 || ||| ||||| || || | | |||||| || ||||||||||| || | Sbjct 113777 TTCACATTCTCAATTGTGTCTGAAGCTTCCACTTCAAGAGTGATAGTTTTACCAGTCAAG 113718 Query 480753 GTCTTAACGAAAATTTG 480769 || || || ||||| || Sbjct 113717 GTTTTGACAAAAATCTG 113701 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3267872201544236