Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyocaulus_20viviparus_20[genbank_20GCA_5F000816705.1_202015-03- 12] 7,157 sequences; 160,963,781 total letters Query= NC_020864.1 Length=205622 Score E Sequences producing significant alignments: (Bits) Value seq216 383 2e-101 seq143 154 2e-32 seq9 125 9e-24 seq271 123 3e-23 seq168 123 3e-23 >seq216 Length=210855 Score = 383 bits (424), Expect = 2e-101 Identities = 698/1009 (69%), Gaps = 16/1009 (2%) Strand=Plus/Minus Query 195707 GATGCAGTTGTGACTGTACCTGCTTACTTCAGTGATTCACAACGACAGGCGACAAAGGAC 195766 ||||| || | || || ||||| ||||||| ||||| || || || || || || || Sbjct 130385 GATGCTGTCATTACGGTCCCTGCCTACTTCAACGATTCGCAGCGTCAAGCTACTAAAGAT 130326 Query 195767 GCTGCTGCTATTGCGGGTCTAAACTGTCTTAGAATTATCAATGAACCAACAGCGGCTGCA 195826 || | ||||| || || || || |||| |||| || |||||||| || || |||||| Sbjct 130325 GCGGGAGCTATCGCAGGGCTTAATGTTCTTCGAATAATTAATGAACCTACTGCTGCTGCA 130266 Query 195827 ATTGCTTATGGTCTGGACAAGAACAAGGACGAAGATAAA--AATGTATTGATCTTTGATC 195884 |||||||| || || || ||||| |||| | || || || || | || ||||| | Sbjct 130265 ATTGCTTACGGGCTAGATAAGAA--AGGAACAGGAGAACGTAACGTCCTCATTTTTGACC 130208 Query 195885 TCGGTGGTGGTACGTTTGATGTCTCACTTCTCAATATTGAAGGTGGTATATTCGAAGTAA 195944 | |||||||| || || ||||| || || | | || |||| ||| || |||||||||| Sbjct 130207 TTGGTGGTGGGACTTTCGATGTTTCCATTTTGACCATAGAAGATGGCATTTTCGAAGTAA 130148 Query 195945 AGGCTACTGCTGGTGATACTCATCTAGGTGGTGAAGATTTCGATGCACGTCTTCTCCGTC 196004 || | || ||||| || || ||||| || || || || |||||| | | | | Sbjct 130147 AGTCGACCGCTGGAGACACGCATCTTGGAGGAGAGGACTTCGATAACAGAATGGTAAACC 130088 Query 196005 ATTTGTCTGATGAGTTCCGTCGAAAGAATAAGAAAGATATTTCTGGAAATCCTAGGGCTC 196064 |||| | |||||| |||| ||||||| ||| | | |||||| | |||| Sbjct 130087 ATTTCGTGGCGGAGTTCAAAAGAAAACATAAGAAGGATTTGAACAGTAATCCTCGCGCTC 130028 Query 196065 TTCGTCGGCTTAGG-ACTGCATGTGAACGTGCCAAACGAACTCTCTCTTCTACGGCTCAA 196123 | | || |||| | ||||| ||||| || || || || || | || || | | || Sbjct 130027 TGAGACG-CTTACGTACTGCCTGTGAGCGAGCTAAGCGCACGTTGTCATCGTCATCACAG 129969 Query 196124 ACAATGGTTGAGATTGATTCGTTGTTTGACGGAATTGACTTCTATACAACTATTACCCGT 196183 | | |||||||||||||||||||| |||||||| ||||| || | || |||||| Sbjct 129968 GCGTCTATCGAGATTGATTCGTTGTTTGAAGGAATTGATTTCTACACTAACATCACCCGT 129909 Query 196184 GCACGTTTTGAAGAGTTAAACTCTGATTTGTTTAGGAAGTGTATGGAACCTGTTGAACAA 196243 || || ||||||||| || |||| || || | |||||| ||||| ||| || Sbjct 129908 GCTCGCTTTGAAGAGCTATGTGCTGACTTATTCCGTTCTACTATGGATCCTGTAGAA-AA 129850 Query 196244 GTA-CTTCGTGACGCAAAGATGGATAAGTCTAAGGTTGATGAAATTGTCCTTGTGGGAGG 196302 || ||| | || || || ||||| || | | || |||| ||||||||||| || || Sbjct 129849 GTCGCTTAGAGATGCTAAAATGGACAAAAGTCAAGTCAATGATATTGTCCTTGTTGGTGG 129790 Query 196303 ATCAACCCGTATTCCGAAGATTCAACAGATGCTTTCTAGCTTCTTCAATAATAAAGATTT 196362 |||||| ||||| || || | ||| || | |||||| ||| ||| ||||| || Sbjct 129789 ATCAACACGTATACCTAAAGTGCAAAAGCTTCTTTCTGACTTGTTCTCAGGGAAAGAGTT 129730 Query 196363 AAACAAAACGATCAACCCGGATGAAGCAGTTGCTTATGGTGCGGCCGTTCAGGCTGCTAT 196422 ||||||| |||| ||||| |||||||| || || || || || || || || || ||||| Sbjct 129729 AAACAAATCGATTAACCCTGATGAAGCTGTGGCGTACGGAGCTGCTGTGCAAGCCGCTAT 129670 Query 196423 TCTCTCAGGTGTTGACAA-TAATAA--CGTCCAAGATCTTCTGCTACTTGATGTTGCACC 196479 ||||||||| |||||| | || ||||| ||||| || ||||||||||| || || Sbjct 129669 TCTCTCAGG---TGACAAGTCGGAAGCTGTCCAGGATCTCCTTCTACTTGATGTGGCTCC 129613 Query 196480 CGTATCCCTGGGTCTTGAAACAGCGGGTGGTGTTATGACTAAAATTATTGATAGGAACAC 196539 | || |||||| |||| || || || || ||||||||| | || | ||||| || Sbjct 129612 TCTTTCACTGGGTATTGAGACGGCAGGAGGCGTTATGACTGCTCTGATAAAGAGGAATAC 129553 Query 196540 AACTATTCCGACTAAGAAGGAACAAGTCTTT-TCAACGTATTCCGATAATCAACCAGGTG 196598 || || ||||| ||| | | | || |||| | ||||| || ||||| || || || | Sbjct 129552 TACCATCCCGACGAAG-ACTAGCCAGACTTTCACTACGTACTCTGATAACCAGCCTGGAG 129494 Query 196599 TTCATATTCAAGTATATGAAGGAGAACGCTCCCGTGCAAAGGATAACCATCTACTTGGAA 196658 | | || ||||| | || |||||||| | | || |||||| | || || || | Sbjct 129493 TACTGATCCAAGTTTTCGAGGGAGAACGAGCAATGACCAAAGATAACAACCTTCTAGGGA 129434 Query 196659 CTTTCGATTTGACGGGGATTCCAGCTGCACCCAGAGGTGTTCCACAGAT 196707 || || || | || || || |||| || | || ||||| || || Sbjct 129433 AGTTTGAATTATCTGGCATCCCGCCTGCGCCACGCGGAGTTCCGCAAAT 129385 >seq143 Length=269893 Score = 154 bits (170), Expect = 2e-32 Identities = 123/148 (83%), Gaps = 0/148 (0%) Strand=Plus/Plus Query 171855 TAGTAGTATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGA 171914 ||| || ||||| || || |||||||| || ||||| || || |||||| | ||||| || Sbjct 137146 TAGAAGCATGCAGATTTTCGTGAAAACGCTCACTGGCAAGACAATCACCTTAGAGGTCGA 137205 Query 171915 GTCGTCAGACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACC 171974 |||| ||||||||||| || | |||||||||||||| ||||||||||| ||||| || Sbjct 137206 AGCGTCCGACACAATCGAGAATGTGAAAGCCAAGATTCAGGATAAGGAAGGTATTCCTCC 137265 Query 171975 CGATCAGCAACGACTTATTTTTGCTGGT 172002 ||||| ||||||||||||||||||||| Sbjct 137266 AGATCAACAACGACTTATTTTTGCTGGT 137293 Score = 120 bits (132), Expect = 4e-22 Identities = 114/146 (78%), Gaps = 0/146 (0%) Strand=Plus/Plus Query 171857 GTAGTATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGT 171916 || ||||||| ||||||||||| || || || || || || ||||| || || || || Sbjct 137470 GTGGTATGCAGATCTTTGTGAAGACTCTCACAGGGAAGACAATCACGCTTGAAGTCGAAG 137529 Query 171917 CGTCAGACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCG 171976 |||| || || || || || | ||||||||||||||||| || ||||||||||| || | Sbjct 137530 CGTCTGATACTATTGAGAATGTGAAAGCCAAGATTCAAGACAAAGAAGGCATTCCTCCTG 137589 Query 171977 ATCAGCAACGACTTATTTTTGCTGGT 172002 |||| || ||||| ||||| || ||| Sbjct 137590 ATCAACAGCGACTCATTTTCGCAGGT 137615 Score = 118 bits (130), Expect = 1e-21 Identities = 115/148 (78%), Gaps = 0/148 (0%) Strand=Plus/Plus Query 171857 GTAGTATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGT 171916 || |||||||||| || ||||| || || || || || || || ||||| || || ||| Sbjct 138434 GTGGTATGCAAATTTTCGTGAAGACTCTGACAGGGAAGACAATAACCCTTGAAGTCGAGG 138493 Query 171917 CGTCAGACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCG 171976 |||| |||||||| || || | ||||| ||||||||||| |||||||| || || || | Sbjct 138494 CGTCGGACACAATTGAGAATGTGAAAGCTAAGATTCAAGACAAGGAAGGGATCCCTCCAG 138553 Query 171977 ATCAGCAACGACTTATTTTTGCTGGTAA 172004 ||||||| || | || || |||||||| Sbjct 138554 ATCAGCAGCGTTTGATATTCGCTGGTAA 138581 Score = 86.0 bits (94), Expect = 8e-12 Identities = 73/90 (81%), Gaps = 0/90 (0%) Strand=Plus/Plus Query 172000 GGTAAACAGCTTGAAGATGGACGTACCCTCGCTGATTACAACGTTCAAAAGGAGTCTACT 172059 |||||||||||||||||||| || || ||| | ||||||||| ||||||| ||||| ||| Sbjct 137385 GGTAAACAGCTTGAAGATGGCCGAACTCTCTCCGATTACAACATTCAAAAAGAGTCCACT 137444 Query 172060 CTACACCTTGTTCTAAGGCTTCGGGGTGGT 172089 || || | || || | ||||| |||||| Sbjct 137445 CTTCATTTGGTCCTCCGTCTTCGTGGTGGT 137474 Score = 86.0 bits (94), Expect = 8e-12 Identities = 80/102 (78%), Gaps = 0/102 (0%) Strand=Plus/Plus Query 171988 CTTATTTTTGCTGGTAAACAGCTTGAAGATGGACGTACCCTCGCTGATTACAACGTTCAA 172047 |||||| || | || ||||| |||||||||||||| || || |||||||||| |||| Sbjct 138017 CTTATTCTTTCAGGGAAACAACTTGAAGATGGACGAACACTTTCTGATTACAATATTCAG 138076 Query 172048 AAGGAGTCTACTCTACACCTTGTTCTAAGGCTTCGGGGTGGT 172089 || ||||| || || || || ||||| | ||||| |||||| Sbjct 138077 AAAGAGTCCACCCTCCATCTAGTTCTTCGTCTTCGTGGTGGT 138118 >seq9 Length=784367 Score = 125 bits (138), Expect = 9e-24 Identities = 113/142 (80%), Gaps = 0/142 (0%) Strand=Plus/Plus Query 171862 ATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTCA 171921 ||||| || ||||| |||||| | ||||| ||||||||||| || || || || | ||| Sbjct 113698 ATGCAGATTTTTGTCAAAACCTTGACTGGTAAAACTATCACTCTTGAAGTGGAAGCTTCA 113757 Query 171922 GACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCGATCAG 171981 |||||||| || || | ||||| || |||||||| || ||||| || ||||| ||||| Sbjct 113758 GACACAATTGAGAATGTGAAAGCAAAAATTCAAGACAAAGAAGGAATCCCACCAGATCAA 113817 Query 171982 CAACGACTTATTTTTGCTGGTA 172003 || || || ||||||||||||| Sbjct 113818 CAGCGGCTAATTTTTGCTGGTA 113839 Score = 123 bits (136), Expect = 3e-23 Identities = 115/146 (79%), Gaps = 0/146 (0%) Strand=Plus/Plus Query 171859 AGTATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCG 171918 || ||||| || ||||||||||| ||||| || || || || || || |||||||| | Sbjct 113089 AGCATGCAGATATTTGTGAAAACACTTACCGGGAAGACGATTACACTAGAGGTTGAAGCC 113148 Query 171919 TCAGACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCGAT 171978 || |||||||| || || | ||||| || ||||||||||| ||||| |||||||| ||| Sbjct 113149 TCCGACACAATTGAGAATGTGAAAGCAAAAATTCAAGATAAAGAAGGAATTCCACCGGAT 113208 Query 171979 CAGCAACGACTTATTTTTGCTGGTAA 172004 || || || | || ||||||||||| Sbjct 113209 CAACAGCGCTTGATATTTGCTGGTAA 113234 Score = 123 bits (136), Expect = 3e-23 Identities = 115/146 (79%), Gaps = 0/146 (0%) Strand=Plus/Plus Query 171862 ATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTCA 171921 |||||||| ||||| ||||| || ||||| ||||||||||| || || || || | ||| Sbjct 113402 ATGCAAATTTTTGTCAAAACTCTAACTGGTAAAACTATCACTCTTGAAGTGGAAGCTTCA 113461 Query 171922 GACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCGATCAG 171981 ||||| || || ||| | || || || |||||||| || ||||| || ||||| |||||| Sbjct 113462 GACACGATTGAGAACGTAAAGGCAAAAATTCAAGACAAAGAAGGAATCCCACCAGATCAG 113521 Query 171982 CAACGACTTATTTTTGCTGGTAAACA 172007 || || | |||||||| ||||| || Sbjct 113522 CAGAGATTGATTTTTGCAGGTAATCA 113547 Score = 107 bits (118), Expect = 3e-18 Identities = 109/142 (77%), Gaps = 0/142 (0%) Strand=Plus/Plus Query 171862 ATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTCA 171921 |||||||| |||||||| || || || ||||| || ||||| | || |||||| | ||| Sbjct 114473 ATGCAAATATTTGTGAAGACGCTAACAGGAAAGACGATCACGTTGGAAGTTGAGGCCTCA 114532 Query 171922 GACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCGATCAG 171981 ||||| || || || | || | || || |||||||||||||| || ||||| || || Sbjct 114533 GACACTATTGAAAATGTGAAGACGAAAATACAAGATAAGGAAGGTATCCCACCAGACCAA 114592 Query 171982 CAACGACTTATTTTTGCTGGTA 172003 ||| |||| ||||| || |||| Sbjct 114593 CAAAGACTAATTTTCGCGGGTA 114614 >seq271 Length=165737 Score = 123 bits (136), Expect = 3e-23 Identities = 112/141 (79%), Gaps = 0/141 (0%) Strand=Plus/Plus Query 171862 ATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTCA 171921 |||||||| || ||||| || |||||||||||||||||||| || || || ||| | || Sbjct 44643 ATGCAAATTTTCGTGAAGACTCTTACTGGAAAAACTATCACTCTTGAAGTGGAGGCCTCT 44702 Query 171922 GACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCGATCAG 171981 ||||| || || || | ||||| ||||| |||||||||||||||||||| || || || Sbjct 44703 GACACCATTGAGAATGTTAAAGCAAAGATCCAAGATAAGGAAGGCATTCCTCCAGACCAA 44762 Query 171982 CAACGACTTATTTTTGCTGGT 172002 ||||| | || || || ||| Sbjct 44763 CAACGGTTGATCTTCGCCGGT 44783 >seq168 Length=259614 Score = 123 bits (136), Expect = 3e-23 Identities = 166/231 (72%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 195619 GAAACAATTTGCTCCCGAAGAAATTTCGTCTATGGTGTTGATTAAGATGAAGGAGACTGC 195678 ||| || || |||| |||||||| || | ||||| ||| || |||||||| | || Sbjct 88995 GAAGCATTTCACTCCTGAAGAAATATCCGCCATGGTATTGGGCAAAATGAAGGAAATCGC 88936 Query 195679 GGAATCTTTCATGGGTAAAACTGTGAAAGATGCAGTTGTGACTGTACCTGCTTACTTCAG 195738 || || | | || ||| || || | || || || ||||||||||| || |||| Sbjct 88935 TGAGTCCTATCTAGGAAAAGAAGTTAAGCACGCTGTAGTTACTGTACCTGCATATTTCAA 88876 Query 195739 TGATTCACAACGACAGGCGACAAAGGACGCTGCTGCTATTGCGGGTCTAAACTGTCTTAG 195798 ||| ||||||| || || ||||| || |||| ||||||| ||||| ||| | | | Sbjct 88875 CGATGCACAACGTCAAGCTACAAAAGATGCTGGAACTATTGCTGGTCTCAACGTTGTACG 88816 Query 195799 AATTATCAATGAACCAACAGCGGCTGCAATTGCTTATGGTCTGGACAAGAA 195849 ||| ||||| ||||| || || ||||| || ||||| ||||| || ||||| Sbjct 88815 AATAATCAACGAACCCACTGCAGCTGCTATAGCTTACGGTCTAGATAAGAA 88765 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 657803545985040