Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyocaulus_20viviparus_20[genbank_20GCA_5F000816705.1_202015-03- 12] 7,157 sequences; 160,963,781 total letters Query= NC_021246.1 Length=281182 Score E Sequences producing significant alignments: (Bits) Value seq9 132 9e-26 seq143 107 3e-18 >seq9 Length=784367 Score = 132 bits (146), Expect = 9e-26 Identities = 118/148 (80%), Gaps = 0/148 (0%) Strand=Plus/Minus Query 193213 ATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTATCTTGTA 193272 |||| || || |||||||| |||||||| ||||| || || ||||||||||| ||||| | Sbjct 113549 ATTGATTACCTGCAAAAATCAATCTCTGCTGATCTGGTGGGATTCCTTCTTTGTCTTGAA 113490 Query 193273 TTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATAGTTTTAC 193332 |||| | |||| || ||| || || |||| || ||||| ||||| |||||||||| Sbjct 113489 TTTTTGCCTTTACGTTCTCAATCGTGTCTGAAGCTTCCACTTCAAGAGTGATAGTTTTAC 113430 Query 193333 CTGTTAGCGTTTTTACAAATATTTGCAT 193360 | ||||| ||||| ||||| |||||||| Sbjct 113429 CAGTTAGAGTTTTGACAAAAATTTGCAT 113402 Score = 122 bits (134), Expect = 2e-22 Identities = 111/140 (79%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 193221 CCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTT 193280 || || ||||||| ||| ||||| || || || || ||||| |||||||||||||| || Sbjct 114612 CCCGCGAAAATTAGTCTTTGTTGGTCTGGTGGGATACCTTCCTTATCTTGTATTTTCGTC 114553 Query 193281 TTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGC 193340 || | |||| |||||| || || | ||||||||| | || || || || ||||||||| Sbjct 114552 TTCACATTTTCAATAGTGTCTGAGGCCTCAACTTCCAACGTGATCGTCTTTCCTGTTAGC 114493 Query 193341 GTTTTTACAAATATTTGCAT 193360 || || |||||||||||||| Sbjct 114492 GTCTTCACAAATATTTGCAT 114473 Score = 113 bits (124), Expect = 8e-20 Identities = 109/140 (78%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 193221 CCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTT 193280 || |||||||||| | ||||||||| || || ||||||||||| ||||| ||||| | | Sbjct 113837 CCAGCAAAAATTAGCCGCTGTTGATCTGGTGGGATTCCTTCTTTGTCTTGAATTTTTGCT 113778 Query 193281 TTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGC 193340 || | ||| ||| || || |||| || ||||| ||||| ||||||||||| || | Sbjct 113777 TTCACATTCTCAATTGTGTCTGAAGCTTCCACTTCAAGAGTGATAGTTTTACCAGTCAAG 113718 Query 193341 GTTTTTACAAATATTTGCAT 193360 ||||| ||||| || ||||| Sbjct 113717 GTTTTGACAAAAATCTGCAT 113698 Score = 109 bits (120), Expect = 1e-18 Identities = 110/143 (77%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 193218 TTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTATCTTGTATTTTG 193277 || || ||||| || || | ||||||||| || || ||||||||||||||||| ||||| Sbjct 113234 TTACCAGCAAATATCAAGCGCTGTTGATCCGGTGGAATTCCTTCTTTATCTTGAATTTTT 113175 Query 193278 GTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATAGTTTTACCTGTT 193337 | ||| | ||| ||| || ||||| | ||||| ||||| || || || || || || Sbjct 113174 GCTTTCACATTCTCAATTGTGTCGGAGGCTTCAACCTCTAGTGTAATCGTCTTCCCGGTA 113115 Query 193338 AGCGTTTTTACAAATATTTGCAT 193360 || ||||| |||||||| ||||| Sbjct 113114 AGTGTTTTCACAAATATCTGCAT 113092 >seq143 Length=269893 Score = 107 bits (118), Expect = 3e-18 Identities = 97/122 (80%), Gaps = 0/122 (0%) Strand=Plus/Minus Query 193239 TGTTGATCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTA 193298 || || || ||||| |||||||||||||||||||| || | |||| |||| ||| || Sbjct 138240 TGCTGGTCCGGAGGGATTCCTTCTTTATCTTGTATCTTAGCCTTTACATTTTCAATCGTG 138181 Query 193299 TCGGAAGACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGC 193358 || || | ||| || ||||| ||||| || || ||||| ||||| |||||||| |||||| Sbjct 138180 TCAGATGCCTCCACCTCTAGGGTTATTGTCTTTCCTGTCAGCGTCTTTACAAAAATTTGC 138121 Query 193359 AT 193360 || Sbjct 138120 AT 138119 Score = 104 bits (114), Expect = 4e-17 Identities = 107/140 (76%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 193221 CCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTT 193280 || || ||||| | || ||||||||||||||| || |||||||| ||||| || |||| | Sbjct 137614 CCTGCGAAAATGAGTCGCTGTTGATCAGGAGGAATGCCTTCTTTGTCTTGAATCTTGGCT 137555 Query 193281 TTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGC 193340 || | ||| ||||||||| || | || ||||| || || || || || ||||| || Sbjct 137554 TTCACATTCTCAATAGTATCAGACGCTTCGACTTCAAGCGTGATTGTCTTCCCTGTGAGA 137495 Query 193341 GTTTTTACAAATATTTGCAT 193360 || || ||||| || ||||| Sbjct 137494 GTCTTCACAAAGATCTGCAT 137475 Score = 84.2 bits (92), Expect = 4e-11 Identities = 103/141 (73%), Gaps = 0/141 (0%) Strand=Plus/Minus Query 193221 CCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTT 193280 || ||||| || | | ||| ||||||||||| |||||||| || ||||| || |||| Sbjct 137941 CCAGCAAAGATAAGACGCTGCTGATCAGGAGGAATTCCTTCCTTGTCTTGGATCTTGGCC 137882 Query 193281 TTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGC 193340 || | || || ||||| || | |||||| || || || || || || ||||||| Sbjct 137881 TTAACGTTCTCGATGGTATCAGATGCCTCAACCTCCAGTGTGATCGTCTTCCCTGTTAAT 137822 Query 193341 GTTTTTACAAATATTTGCATT 193361 || || ||||| || |||||| Sbjct 137821 GTCTTAACAAAAATCTGCATT 137801 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 899573914668240