Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyocaulus_20viviparus_20[genbank_20GCA_5F000816705.1_202015-03- 12] 7,157 sequences; 160,963,781 total letters Query= NC_021247.1 Length=228750 Score E Sequences producing significant alignments: (Bits) Value seq9 100 4e-16 seq271 87.8 3e-12 >seq9 Length=784367 Score = 100 bits (110), Expect = 4e-16 Identities = 109/145 (75%), Gaps = 0/145 (0%) Strand=Plus/Plus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 |||||||||||| | || || | || ||||| || || || || ||||| || | || Sbjct 114473 ATGCAAATATTTGTGAAGACGCTAACAGGAAAGACGATCACGTTGGAAGTTGAGGCCTCA 114532 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 || | |||| ||| ||||| | |||||||||||||| ||||| || || ||||| ||| Sbjct 114533 GACACTATTGAAAATGTGAAGACGAAAATACAAGATAAGGAAGGTATCCCACCAGACCAA 114592 Query 155943 CAAAGATTGATTTATGCCGGTAAGC 155967 |||||| | |||| || |||| || Sbjct 114593 CAAAGACTAATTTTCGCGGGTATGC 114617 Score = 91.5 bits (100), Expect = 2e-13 Identities = 106/143 (74%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 ||||| |||||| | |||||| | || || || || |||||| |||| || |||| || Sbjct 113092 ATGCAGATATTTGTGAAAACACTTACCGGGAAGACGATTACACTAGAGGTTGAAGCCTCC 113151 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 || | ||| || |||||| ||||| |||||||||||||| || || || || ||| Sbjct 113152 GACACAATTGAGAATGTGAAAGCAAAAATTCAAGATAAAGAAGGAATTCCACCGGATCAA 113211 Query 155943 CAAAGATTGATTTATGCCGGTAA 155965 || | ||||| | ||| ||||| Sbjct 113212 CAGCGCTTGATATTTGCTGGTAA 113234 >seq271 Length=165737 Score = 87.8 bits (96), Expect = 3e-12 Identities = 104/141 (74%), Gaps = 0/141 (0%) Strand=Plus/Plus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 |||||||| || | || || | |||||||||||||| || | ||||| || | ||| Sbjct 44643 ATGCAAATTTTCGTGAAGACTCTTACTGGAAAAACTATCACTCTTGAAGTGGAGGCCTCT 44702 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 || | ||| || || ||| || || |||||||| |||||||| |||||||| ||| Sbjct 44703 GACACCATTGAGAATGTTAAAGCAAAGATCCAAGATAAGGAAGGCATTCCTCCAGACCAA 44762 Query 155943 CAAAGATTGATTTATGCCGGT 155963 ||| | ||||| | |||||| Sbjct 44763 CAACGGTTGATCTTCGCCGGT 44783 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 731806524901200