Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyocaulus_20viviparus_20[genbank_20GCA_5F000816705.1_202015-03- 12] 7,157 sequences; 160,963,781 total letters Query= NC_021248.1 Length=307691 Score E Sequences producing significant alignments: (Bits) Value seq9 122 2e-22 seq143 84.2 4e-11 >seq9 Length=784367 Score = 122 bits (134), Expect = 2e-22 Identities = 112/142 (79%), Gaps = 0/142 (0%) Strand=Plus/Minus Query 192395 TACCAGCAAAGATTAATCTCTGTTGATCAGGTGGTATTCCTTCTTTATCTTGTATTTTAT 192454 |||||||||| |||| | ||||||||| ||||| ||||||||||| ||||| ||||| Sbjct 113839 TACCAGCAAAAATTAGCCGCTGTTGATCTGGTGGGATTCCTTCTTTGTCTTGAATTTTTG 113780 Query 192455 TTTTTACATTAGTTATAGAATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTA 192514 ||| ||||| || | ||||| | ||| ||||| ||||| || ||||||||||| | Sbjct 113779 CTTTCACATTCTCAATTGTGTCTGAAGCTTCCACTTCAAGAGTGATAGTTTTACCAGTCA 113720 Query 192515 ATGTTTTAATAAATATCTGCAT 192536 | ||||| | ||| |||||||| Sbjct 113719 AGGTTTTGACAAAAATCTGCAT 113698 Score = 118 bits (130), Expect = 2e-21 Identities = 115/148 (78%), Gaps = 0/148 (0%) Strand=Plus/Minus Query 192389 ATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTGGTATTCCTTCTTTATCTTGTA 192448 |||| ||||| ||||| || |||||||| ||||| ||||| ||||||||||| ||||| | Sbjct 113549 ATTGATTACCTGCAAAAATCAATCTCTGCTGATCTGGTGGGATTCCTTCTTTGTCTTGAA 113490 Query 192449 TTTTATTTTTTACATTAGTTATAGAATCTGACGATTCTACTTCTAGAGTAATGGTTTTAC 192508 |||| ||||| || || | ||||| | ||| ||||| ||||| || ||||||| Sbjct 113489 TTTTTGCCTTTACGTTCTCAATCGTGTCTGAAGCTTCCACTTCAAGAGTGATAGTTTTAC 113430 Query 192509 CAGTTAATGTTTTAATAAATATCTGCAT 192536 |||||| ||||| | ||| || ||||| Sbjct 113429 CAGTTAGAGTTTTGACAAAAATTTGCAT 113402 Score = 114 bits (126), Expect = 3e-20 Identities = 111/143 (78%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 192394 TTACCAGCAAAGATTAATCTCTGTTGATCAGGTGGTATTCCTTCTTTATCTTGTATTTTA 192453 ||||||||||| || || | ||||||||| ||||| ||||||||||||||||| ||||| Sbjct 113234 TTACCAGCAAATATCAAGCGCTGTTGATCCGGTGGAATTCCTTCTTTATCTTGAATTTTT 113175 Query 192454 TTTTTTACATTAGTTATAGAATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTT 192513 ||| ||||| || | || || | ||| || ||||| ||||| || || || || Sbjct 113174 GCTTTCACATTCTCAATTGTGTCGGAGGCTTCAACCTCTAGTGTAATCGTCTTCCCGGTA 113115 Query 192514 AATGTTTTAATAAATATCTGCAT 192536 | |||||| | |||||||||||| Sbjct 113114 AGTGTTTTCACAAATATCTGCAT 113092 Score = 86.0 bits (94), Expect = 1e-11 Identities = 104/142 (73%), Gaps = 0/142 (0%) Strand=Plus/Minus Query 192395 TACCAGCAAAGATTAATCTCTGTTGATCAGGTGGTATTCCTTCTTTATCTTGTATTTTAT 192454 |||| || || |||| ||| ||||| || ||||| || ||||| |||||||||||||| Sbjct 114614 TACCCGCGAAAATTAGTCTTTGTTGGTCTGGTGGGATACCTTCCTTATCTTGTATTTTCG 114555 Query 192455 TTTTTACATTAGTTATAGAATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTA 192514 | || ||||| |||| ||||| | || ||||| | || || || || || |||| Sbjct 114554 TCTTCACATTTTCAATAGTGTCTGAGGCCTCAACTTCCAACGTGATCGTCTTTCCTGTTA 114495 Query 192515 ATGTTTTAATAAATATCTGCAT 192536 || || | |||||| ||||| Sbjct 114494 GCGTCTTCACAAATATTTGCAT 114473 >seq143 Length=269893 Score = 84.2 bits (92), Expect = 4e-11 Identities = 103/141 (73%), Gaps = 0/141 (0%) Strand=Plus/Minus Query 192396 ACCAGCAAAGATTAATCTCTGTTGATCAGGTGGTATTCCTTCTTTATCTTGTATTTTATT 192455 ||| || || || | || |||||||||||| || || |||||||| ||||| || || Sbjct 137615 ACCTGCGAAAATGAGTCGCTGTTGATCAGGAGGAATGCCTTCTTTGTCTTGAATCTTGGC 137556 Query 192456 TTTTACATTAGTTATAGAATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAA 192515 ||| ||||| |||| ||| |||| ||| ||||| || || || || || || || | Sbjct 137555 TTTCACATTCTCAATAGTATCAGACGCTTCGACTTCAAGCGTGATTGTCTTCCCTGTGAG 137496 Query 192516 TGTTTTAATAAATATCTGCAT 192536 || || | ||| |||||||| Sbjct 137495 AGTCTTCACAAAGATCTGCAT 137475 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 984389724106950