Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyocaulus_20viviparus_20[genbank_20GCA_5F000816705.1_202015-03- 12] 7,157 sequences; 160,963,781 total letters Query= NC_021249.1 Length=282895 Score E Sequences producing significant alignments: (Bits) Value seq9 122 2e-22 >seq9 Length=784367 Score = 122 bits (134), Expect = 2e-22 Identities = 112/142 (79%), Gaps = 0/142 (0%) Strand=Plus/Minus Query 171928 TACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGTATTCCTTCTTTATCTTGTATTTTAT 171987 ||||||||||||||| | |||||| || ||||| ||||||||||| ||||| ||||| Sbjct 113839 TACCAGCAAAAATTAGCCGCTGTTGATCTGGTGGGATTCCTTCTTTGTCTTGAATTTTTG 113780 Query 171988 TTTTTACATTAGTTATAGTATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTA 172047 ||| ||||| || || ||||| | ||| ||||| ||||| || ||||||||||| | Sbjct 113779 CTTTCACATTCTCAATTGTGTCTGAAGCTTCCACTTCAAGAGTGATAGTTTTACCAGTCA 113720 Query 172048 ATGTTTTAATGAATATCTGCAT 172069 | ||||| | || |||||||| Sbjct 113719 AGGTTTTGACAAAAATCTGCAT 113698 Score = 118 bits (130), Expect = 2e-21 Identities = 115/148 (78%), Gaps = 0/148 (0%) Strand=Plus/Minus Query 171922 ATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGTATTCCTTCTTTATCTTGTA 171981 |||| ||||| |||||||| |||||||| || || ||||| ||||||||||| ||||| | Sbjct 113549 ATTGATTACCTGCAAAAATCAATCTCTGCTGATCTGGTGGGATTCCTTCTTTGTCTTGAA 113490 Query 171982 TTTTATTTTTTACATTAGTTATAGTATCTGACGATTCTACTTCTAGAGTAATGGTTTTAC 172041 |||| ||||| || || || ||||| | ||| ||||| ||||| || ||||||| Sbjct 113489 TTTTTGCCTTTACGTTCTCAATCGTGTCTGAAGCTTCCACTTCAAGAGTGATAGTTTTAC 113430 Query 172042 CAGTTAATGTTTTAATGAATATCTGCAT 172069 |||||| ||||| | || || ||||| Sbjct 113429 CAGTTAGAGTTTTGACAAAAATTTGCAT 113402 Score = 109 bits (120), Expect = 1e-18 Identities = 110/143 (77%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 171927 TTACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGTATTCCTTCTTTATCTTGTATTTTA 171986 ||||||||||| || || | |||||| || ||||| ||||||||||||||||| ||||| Sbjct 113234 TTACCAGCAAATATCAAGCGCTGTTGATCCGGTGGAATTCCTTCTTTATCTTGAATTTTT 113175 Query 171987 TTTTTTACATTAGTTATAGTATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTT 172046 ||| ||||| || || || || | ||| || ||||| ||||| || || || || Sbjct 113174 GCTTTCACATTCTCAATTGTGTCGGAGGCTTCAACCTCTAGTGTAATCGTCTTCCCGGTA 113115 Query 172047 AATGTTTTAATGAATATCTGCAT 172069 | |||||| | ||||||||||| Sbjct 113114 AGTGTTTTCACAAATATCTGCAT 113092 Score = 95.1 bits (104), Expect = 2e-14 Identities = 106/142 (75%), Gaps = 0/142 (0%) Strand=Plus/Minus Query 171928 TACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGTATTCCTTCTTTATCTTGTATTTTAT 171987 |||| || ||||||| ||| |||||||| ||||| || ||||| |||||||||||||| Sbjct 114614 TACCCGCGAAAATTAGTCTTTGTTGGTCTGGTGGGATACCTTCCTTATCTTGTATTTTCG 114555 Query 171988 TTTTTACATTAGTTATAGTATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTA 172047 | || ||||| ||||| ||||| | || ||||| | || || || || || |||| Sbjct 114554 TCTTCACATTTTCAATAGTGTCTGAGGCCTCAACTTCCAACGTGATCGTCTTTCCTGTTA 114495 Query 172048 ATGTTTTAATGAATATCTGCAT 172069 || || | ||||| ||||| Sbjct 114494 GCGTCTTCACAAATATTTGCAT 114473 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 905055024270600