Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyocaulus_20viviparus_20[genbank_20GCA_5F000816705.1_202015-03- 12] 7,157 sequences; 160,963,781 total letters Query= NC_021923.1 Length=140633 Score E Sequences producing significant alignments: (Bits) Value seq9 114 1e-20 seq271 102 7e-17 seq143 86.0 6e-12 >seq9 Length=784367 Score = 114 bits (126), Expect = 1e-20 Identities = 111/143 (78%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 |||||||| ||| | ||||| || ||||| || || ||||| || || || |||||| || Sbjct 113092 ATGCAGATATTTGTGAAAACACTTACCGGGAAGACGATTACACTAGAGGTTGAAGCCTCC 113151 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 |||||| | || | || ||| ||| || ||||| ||||||||||| || || |||||| Sbjct 113152 GACACAATTGAGAATGTGAAAGCAAAAATTCAAGATAAAGAAGGAATTCCACCGGATCAA 113211 Query 24824 CAACGTTTGATCTTTGCCGGGAA 24846 || || ||||| ||||| || || Sbjct 113212 CAGCGCTTGATATTTGCTGGTAA 113234 Score = 107 bits (118), Expect = 2e-18 Identities = 112/147 (76%), Gaps = 0/147 (0%) Strand=Plus/Plus Query 24703 GATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCAC 24762 |||||| || ||| | ||||| ||||| ||||||||||| || || ||||| ||||| | Sbjct 113401 GATGCAAATTTTTGTCAAAACTCTAACTGGTAAAACTATCACTCTTGAAGTGGAAGCTTC 113460 Query 24763 CGACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCA 24822 ||||| | || | ||||| ||| || ||||||||||||||||| || || ||||| Sbjct 113461 AGACACGATTGAGAACGTAAAGGCAAAAATTCAAGACAAAGAAGGAATCCCACCAGATCA 113520 Query 24823 ACAACGTTTGATCTTTGCCGGGAAACA 24849 || | ||||| ||||| || || || Sbjct 113521 GCAGAGATTGATTTTTGCAGGTAATCA 113547 Score = 105 bits (116), Expect = 6e-18 Identities = 108/141 (77%), Gaps = 0/141 (0%) Strand=Plus/Plus Query 24703 GATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCAC 24762 ||||||||| ||| | ||||| | || ||||||||||| || || ||||| ||||| | Sbjct 113697 GATGCAGATTTTTGTCAAAACCTTGACTGGTAAAACTATCACTCTTGAAGTGGAAGCTTC 113756 Query 24763 CGACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCA 24822 |||||| | || | || ||| ||| || ||||||||||||||||| || || ||||| Sbjct 113757 AGACACAATTGAGAATGTGAAAGCAAAAATTCAAGACAAAGAAGGAATCCCACCAGATCA 113816 Query 24823 ACAACGTTTGATCTTTGCCGG 24843 ||| || | || ||||| || Sbjct 113817 ACAGCGGCTAATTTTTGCTGG 113837 >seq271 Length=165737 Score = 102 bits (112), Expect = 7e-17 Identities = 107/141 (76%), Gaps = 0/141 (0%) Strand=Plus/Plus Query 24703 GATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCAC 24762 |||||| || || | || || || || || |||||||| || || ||||| || ||| | Sbjct 44642 GATGCAAATTTTCGTGAAGACTCTTACTGGAAAAACTATCACTCTTGAAGTGGAGGCCTC 44701 Query 24763 CGACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCA 24822 ||||| | || | || ||| |||||||||||| || ||||| || ||||| || || Sbjct 44702 TGACACCATTGAGAATGTTAAAGCAAAGATCCAAGATAAGGAAGGCATTCCTCCAGACCA 44761 Query 24823 ACAACGTTTGATCTTTGCCGG 24843 |||||| |||||||| ||||| Sbjct 44762 ACAACGGTTGATCTTCGCCGG 44782 >seq143 Length=269893 Score = 86.0 bits (94), Expect = 6e-12 Identities = 94/125 (75%), Gaps = 0/125 (0%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 |||||||||||| | || || || || || || || || ||||| ||||| ||||| | Sbjct 137475 ATGCAGATCTTTGTGAAGACTCTCACAGGGAAGACAATCACGCTTGAAGTCGAAGCGTCT 137534 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 || || | || | || ||| ||||| |||||||||||||| || ||||| |||||| Sbjct 137535 GATACTATTGAGAATGTGAAAGCCAAGATTCAAGACAAAGAAGGCATTCCTCCTGATCAA 137594 Query 24824 CAACG 24828 || || Sbjct 137595 CAGCG 137599 Score = 86.0 bits (94), Expect = 6e-12 Identities = 105/141 (74%), Gaps = 2/141 (1%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 |||||||| ||| |||| || |||| || || || || || || || || || || | Sbjct 137802 ATGCAGATTTTTGTTAAGACATTAACAGGGAAGACGATCACACTGGAGGTTGAGGCATCT 137861 Query 24764 GACACAGTAGA-AACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCA 24822 || || | || |||| ||| | || |||||||||||| |||||||| ||||| ||||| Sbjct 137862 GATACCATCGAGAACGTTAAGGCCAA-GATCCAAGACAAGGAAGGAATTCCTCCTGATCA 137920 Query 24823 ACAACGTTTGATCTTTGCCGG 24843 || ||| | |||||||| || Sbjct 137921 GCAGCGTCTTATCTTTGCTGG 137941 Score = 82.4 bits (90), Expect = 7e-11 Identities = 102/140 (73%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 |||||||| || | |||||||| || || || || || || | || || ||||| || Sbjct 137153 ATGCAGATTTTCGTGAAAACGCTCACTGGCAAGACAATCACCTTAGAGGTCGAAGCGTCC 137212 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 |||||| | || | || ||| ||||| || || || ||||| || ||||| |||||| Sbjct 137213 GACACAATCGAGAATGTGAAAGCCAAGATTCAGGATAAGGAAGGTATTCCTCCAGATCAA 137272 Query 24824 CAACGTTTGATCTTTGCCGG 24843 ||||| | || ||||| || Sbjct 137273 CAACGACTTATTTTTGCTGG 137292 Score = 82.4 bits (90), Expect = 7e-11 Identities = 102/140 (73%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||| || ||| | || ||||| || || || || || || || || || || || | Sbjct 138119 ATGCAAATTTTTGTAAAGACGCTGACAGGAAAGACAATAACCCTAGAGGTGGAGGCATCT 138178 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | |||| ||||| ||||| ||||| ||||||||||| ||||| || || Sbjct 138179 GACACGATTGAAAATGTAAAGGCTAAGATACAAGATAAAGAAGGAATCCCTCCGGACCAG 138238 Query 24824 CAACGTTTGATCTTTGCCGG 24843 ||||| ||||||| || || Sbjct 138239 CAACGCCTGATCTTCGCTGG 138258 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 449857351035960