Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyocaulus_20viviparus_20[genbank_20GCA_5F000816705.1_202015-03- 12] 7,157 sequences; 160,963,781 total letters Query= NC_022098.1 Length=2473870 Score E Sequences producing significant alignments: (Bits) Value seq428 125 1e-22 >seq428 Length=103070 Score = 125 bits (138), Expect = 1e-22 Identities = 165/229 (72%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 ||||||| ||||||||||| || || ||||| ||||| ||| |||| || || || | | Sbjct 54198 TGTACTTCGTGACGGCCTTAGTGCCTTCTGACACGGCATGCTTGGCGAGCTCCCCTGGAA 54257 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC 1485589 |||||| || || || ||||| |||||||||| || || ||||||||| | Sbjct 54258 GGATCAGTCGGACAGCCGTCTGAATCTCGCGGGATGAAATTGTCGAGCGCTTGTTGTAGT 54317 Query 1485590 GCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCA 1485649 | || ||||| || |||| |||| || |||| || |||||| || |||||||||| Sbjct 54318 GGGCAAGGCGTGATGCTTCGGCAGCGATTCGTTCGAACACGTCGTTCACGAACGAGTTCA 54377 Query 1485650 TGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTT 1485698 |||| ||||| | ||| || | || || |||||||| ||||| Sbjct 54378 TGATGGACATTGCTTTCGACGAAACTCCAGTATCTGGGTGCACTTGCTT 54426 Score = 118 bits (130), Expect = 2e-20 Identities = 140/190 (74%), Gaps = 0/190 (0%) Strand=Plus/Plus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 ||||||| ||||||||||| || || || || ||||| ||| |||| || || || | | Sbjct 45831 TGTACTTCGTGACGGCCTTAGTGCCTTCCGACACGGCATGCTTGGCGAGCTCTCCTGGAA 45890 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC 1485589 |||||| || || || ||||| || ||||||| ||||| ||||||||| | Sbjct 45891 GGATCAGCCGGACAGCCGTCTGAATTTCGCGGGATGAAATCGTTGAGCGCTTGTTGTAGT 45950 Query 1485590 GCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCA 1485649 | || ||||| || |||| |||| || |||| || |||||| || |||||||||| Sbjct 45951 GGGCAAGGCGTGATGCTTCGGCAGCGATTCGTTCGAACACGTCGTTCACGAACGAGTTCA 46010 Query 1485650 TGATCGACAT 1485659 |||| ||||| Sbjct 46011 TGATGGACAT 46020 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7915485077266923