Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyocaulus_20viviparus_20[genbank_20GCA_5F000816705.1_202015-03- 12] 7,157 sequences; 160,963,781 total letters Query= NC_023426.1 Length=245717 Score E Sequences producing significant alignments: (Bits) Value seq9 91.5 2e-13 >seq9 Length=784367 Score = 91.5 bits (100), Expect = 2e-13 Identities = 107/142 (75%), Gaps = 2/142 (1%) Strand=Plus/Plus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAA-CATAAC 146090 |||||||||| | || || |||||||||| || || || | || || || | | | Sbjct 114474 TGCAAATATTTGTGAAGACGCTAACAGGAAAGACGATCACGTTGGAAGTTGAGGCCTCA- 114532 Query 146091 GATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAA 146150 || |||||| ||||||| || | ||||||||| ||| ||||| || ||||| || ||| Sbjct 114533 GACACTATTGAAAATGTGAAGACGAAAATACAAGATAAGGAAGGTATCCCACCAGACCAA 114592 Query 146151 CAAAGACTCATTTTTGCAGGTA 146172 |||||||| ||||| || |||| Sbjct 114593 CAAAGACTAATTTTCGCGGGTA 114614 Score = 89.7 bits (98), Expect = 8e-13 Identities = 108/147 (73%), Gaps = 0/147 (0%) Strand=Plus/Plus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091 ||||||| || | ||||| |||| || ||||| || ||| |||| || ||| | | Sbjct 113403 TGCAAATTTTTGTCAAAACTCTAACTGGTAAAACTATCACTCTTGAAGTGGAAGCTTCAG 113462 Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151 | || ||| | || ||||| ||||| ||| |||||||| || ||||| ||||| | Sbjct 113463 ACACGATTGAGAACGTAAAGGCAAAAATTCAAGACAAAGAAGGAATCCCACCAGATCAGC 113522 Query 146152 AAAGACTCATTTTTGCAGGTAAACAAT 146178 | ||| | |||||||||||||| |||| Sbjct 113523 AGAGATTGATTTTTGCAGGTAATCAAT 113549 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 786096067588440