Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyocaulus_20viviparus_20[genbank_20GCA_5F000816705.1_202015-03- 12] 7,157 sequences; 160,963,781 total letters Query= NC_023442.1 Length=120420 Score E Sequences producing significant alignments: (Bits) Value seq9 116 3e-21 >seq9 Length=784367 Score = 116 bits (128), Expect = 3e-21 Identities = 116/148 (78%), Gaps = 2/148 (1%) Strand=Plus/Minus Query 29640 TTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTGTCTTGTAA 29699 ||| || || ||| | |||||||| |||||||| || || || || ||||||||||| || Sbjct 113548 TTGATTACCTGCAAAAATCAATCTCTGCTGATCTGGTGGGATTCCTTCTTTGTCTTG-AA 113490 Query 29700 TTTTTGT-TTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATAGTTTTGC 29758 |||||| || || | || | ||||| ||| ||| ||||||||||| |||||||| | Sbjct 113489 TTTTTGCCTTTACGTTCTCAATCGTGTCTGAAGCTTCCACTTCAAGAGTGATAGTTTTAC 113430 Query 29759 CAGTTAAGGTTTTAACAAATATCTGCAT 29786 |||||| ||||| ||||| || ||||| Sbjct 113429 CAGTTAGAGTTTTGACAAAAATTTGCAT 113402 Score = 113 bits (124), Expect = 3e-20 Identities = 111/141 (79%), Gaps = 2/141 (1%) Strand=Plus/Minus Query 29647 CCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTGTCTTGTAATTTTTG- 29705 |||||| | || | | || ||||| || || || || ||||||||||| |||||||| Sbjct 113837 CCAGCAAAAATTAGCCGCTGTTGATCTGGTGGGATTCCTTCTTTGTCTTG-AATTTTTGC 113779 Query 29706 TTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATAGTTTTGCCAGTTAA 29765 ||| ||| | || | ||||| ||| ||| ||||||||||| |||||||| ||||| || Sbjct 113778 TTTCACATTCTCAATTGTGTCTGAAGCTTCCACTTCAAGAGTGATAGTTTTACCAGTCAA 113719 Query 29766 GGTTTTAACAAATATCTGCAT 29786 |||||| ||||| |||||||| Sbjct 113718 GGTTTTGACAAAAATCTGCAT 113698 Score = 95.1 bits (104), Expect = 9e-15 Identities = 109/144 (76%), Gaps = 2/144 (1%) Strand=Plus/Minus Query 29644 TTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTGTCTTGTAATTTT 29703 || |||||| ||||||| | || |||||||| ||||| || ||||| ||||| |||||| Sbjct 113234 TTACCAGCAAATATCAAGCGCTGTTGATCCGGTGGAATTCCTTCTTTATCTTG-AATTTT 113176 Query 29704 TG-TTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATAGTTTTGCCAGT 29762 || ||| ||| | || | ||||| || ||| || || || || || || || || || Sbjct 113175 TGCTTTCACATTCTCAATTGTGTCGGAGGCTTCAACCTCTAGTGTAATCGTCTTCCCGGT 113116 Query 29763 TAAGGTTTTAACAAATATCTGCAT 29786 | ||||| |||||||||||||| Sbjct 113115 AAGTGTTTTCACAAATATCTGCAT 113092 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 385185598894137