Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyocaulus_20viviparus_20[genbank_20GCA_5F000816705.1_202015-03- 12] 7,157 sequences; 160,963,781 total letters Query= NC_023639.1 Length=1168989 Score E Sequences producing significant alignments: (Bits) Value seq216 289 2e-72 seq168 140 2e-27 >seq216 Length=210855 Score = 289 bits (320), Expect = 2e-72 Identities = 684/1015 (67%), Gaps = 16/1015 (2%) Strand=Plus/Plus Query 281468 ACTTCAATTTGAGGGACCCCTCTCTGAGCAGGTGGGATCCCTTCCAAATTAAATGTTCCC 281527 || || ||||| || || || | | ||||| ||||| || || | ||| | || Sbjct 129379 ACCTCGATTTGCGGAACTCCGCGTGGCGCAGGCGGGATGCCAGATAATTCAAACTTCCCT 129438 Query 281528 AGATTATTATTATCTTTAGTGAATTTTCGTTCACCCTCGAAAATTTGGAT-AGTAACTAC 281586 ||| || |||||||| || | | |||||| |||||||||| |||||| |||| || | Sbjct 129439 AGAAGGTTGTTATCTTTGGTCATTGCTCGTTCTCCCTCGAAAACTTGGATCAGTA-CTCC 129497 Query 281587 AGTTTGATTATCTGAATAAGTTGTAAATACTCTGGATTTTTTACAA-GGAATTGTTGTGT 281645 || || ||||| || || || || || | ||||| | | | | || || || || | Sbjct 129498 AGGCTGGTTATCAGAGTACGTAGTGAA-AGTCTGGCTAGTCTTCGTCGGGATGGTAGTAT 129556 Query 281646 TTCTATCAATAATATTGGTCATAATACCACCAGCTGTTTCTAAACCAAGAGAAAGAGGAG 281705 | || | || | | ||||||| || || || || || | ||| || |||||||||| Sbjct 129557 TCCTCTTTATCAGAGCAGTCATAACGCCTCCTGCCGTCTCAATACCCAGTGAAAGAGGAG 129616 Query 281706 TGACATCAACTAGGACAATATTTTGAAGTTTTTCATCAGTTTGACCAACAAGAATAGCTG 281765 ||||||| ||| | | || || | ||| | | ||| |||||||| | Sbjct 129617 CCACATCAAGTAGAAGGAGATCCTGGACAGCTTCCGACTTGTCACCTGAGAGAATAGCGG 129676 Query 281766 CTTGAATAGCAGCACCATATGCAACAGCTTCATCAGGATTAACAGTTTCATTTAGTTTTT 281825 |||| | |||||| || || || |||||||||||||| |||| | || |||| | || Sbjct 129677 CTTGCACAGCAGCTCCGTACGCCACAGCTTCATCAGGGTTAATCGATTTGTTTAACTCTT 129736 Query 281826 TACCATTGAAAAAATTTGAAAGAAGTTGTCTTACCTTAGGAATACGAGATGATCCTCCAA 281885 | || ||| || | |||||||| | | || ||||| ||||| | |||||| |||| Sbjct 129737 TCCCTGAGAACAAGTCAGAAAGAAGCTTTTGCACTTTAGGTATACGTGTTGATCCACCAA 129796 Query 281886 CTAATACAATTTCATGCACCTGTGATTTATCCAGTTTTGAATC-CAATAAAACTTTTTCA 281944 | | ||||| |||| || || ||| |||| ||| | ||| | | || ||||| Sbjct 129797 CAAGGACAATATCATTGACTTGACTTTTGTCCATTTTAGCATCTCTAAGCGAC-TTTTCT 129855 Query 281945 ACGGGTTCAAGACCAGCTCTAAACAAGTCTGAACAAAGTTCTTCGAATTTAGCTCTAGTA 282004 || || || | | || | || ||||| | ||| || ||||| || ||| | || Sbjct 129856 ACAGGATCCATAGTAGAACGGAATAAGTCAGCACATAGCTCTTCAAAGCGAGCACGGGTG 129915 Query 282005 AGAGTGACATTA-TAATCAATTCCTTCGAACAAAGAATCAACTTCAATCGTAGTTTGAGT 282063 | || | || ||||||||||||| ||||| ||||||| || || | | || | Sbjct 129916 A-TGTTAGTGTAGAAATCAATTCCTTCAAACAACGAATCAATCTCGATAGACGCCTGTGA 129974 Query 282064 CGAAGAAGATAGTGCACGTTTAGCACGTTCACATGCTGTCCTTAGTCTTCGTA-AGGCTT 282122 || || || | | || ||||| || ||||| || || | || | || | || Sbjct 129975 TGACGATGACAACGTGCGCTTAGCTCGCTCACAGGCAGTACGTAAGCGTCTCAGAGCGCG 130034 Query 282123 TTGCTGATTGATTCAAATCTGTTTTATATTTTCTCTTGAAATCTTCAACACACCATG--T 282180 | | | || |||||||| | |||| |||||| ||||| || | ||| ||| | Sbjct 130035 AGGATTACTG-TTCAAATCCTTCTTATGTTTTCTTTTGAA--CTCCGCCACGAAATGGTT 130091 Query 282181 TACAAGACGATTATCAAAATCTTCACCTCCCAATTTAGTATTTCCTGACGTAGCTCTTAC 282240 ||| | | ||||| || || || ||||| | | || | ||| | || | |||| Sbjct 130092 TACCATTCTGTTATCGAAGTCCTCTCCTCCAAGATGCGTGTCTCCAGCGGTCGACTTTAC 130151 Query 282241 TTGGAAAAGTCCATCTTCAAGAGACAAAAGAGTAACATCATGGGTTCCACCACCCATATC 282300 || ||||| |||||||| | | ||||| | |||||| || |||||||| | || Sbjct 130152 TTCGAAAATGCCATCTTCTATGGTCAAAATGGAAACATCGAAAGTCCCACCACCAAGGTC 130211 Query 282301 AAAAATAAGTACATTCATTTCT-TTGTCTTGGTTTTTATCAAGACCATACGCAAAAGCAG 282359 |||||| || || || |||| ||| | || ||||| || || || |||| |||| Sbjct 130212 AAAAATGAGGACGTTACGTTCTCCTGT-TCCTTTCTTATCTAGCCCGTAAGCAATTGCAG 130270 Query 282360 CAGCAGTTGGTTCATTAATAATTCTCAAAACATTAAGACCAGCAATTCTTCCTGCATCTT 282419 ||||||| ||||||||||| |||| | ||||||||| || || || ||| ||||||| Sbjct 130271 CAGCAGTAGGTTCATTAATTATTCGAAGAACATTAAGCCCTGCGATAGCTCCCGCATCTT 130330 Query 282420 TAGTGGCTTGTCTTTGTGAATCGTTAAAATATGCAGGAACAGTAATAACGGCATC 282474 |||| ||||| | || |||||||| || || ||||| || ||||| || ||||| Sbjct 130331 TAGTAGCTTGACGCTGCGAATCGTTGAAGTAGGCAGGGACCGTAATGACAGCATC 130385 >seq168 Length=259614 Score = 140 bits (154), Expect = 2e-27 Identities = 163/220 (74%), Gaps = 0/220 (0%) Strand=Plus/Plus Query 282332 TTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACA 282391 || ||||| ||||| || || | |||||| ||||| ||||| || || |||| | ||| Sbjct 88765 TTCTTATCTAGACCGTAAGCTATAGCAGCTGCAGTGGGTTCGTTGATTATTCGTACAACG 88824 Query 282392 TTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATAT 282451 || ||||||||||| |||| |||||||| || ||||| | ||||| |||||| |||||| Sbjct 88825 TTGAGACCAGCAATAGTTCCAGCATCTTTTGTAGCTTGACGTTGTGCATCGTTGAAATAT 88884 Query 282452 GCAGGAACAGTAATAACGGCATCTGTTACTTCTTTTCCAATATAAGCGCTTGCTGTTTGT 282511 ||||| ||||||| || || | | ||||||||||| | ||| | || ||| Sbjct 88885 GCAGGTACAGTAACTACAGCGTGCTTAACTTCTTTTCCTAGATAGGACTCAGCGATTTCC 88944 Query 282512 TTCATTTTACTTAAAATCATTGATGAAATTTGTTCTGGAG 282551 |||||||| | || | ||| | || |||| ||| |||| Sbjct 88945 TTCATTTTGCCCAATACCATGGCGGATATTTCTTCAGGAG 88984 Score = 114 bits (126), Expect = 1e-19 Identities = 207/301 (69%), Gaps = 4/301 (1%) Strand=Plus/Plus Query 281763 CTGCTTGAATAGCAGCACCATATGCAACAGCTTCATCAGGATTAACAGTTTCATTTAGTT 281822 ||||||| | |||||||||||| |||||||||||||||||||| | | | ||| Sbjct 87986 CTGCTTGCACAGCAGCACCATAAGCAACAGCTTCATCAGGATTGATACCTCGTGACGGTT 88045 Query 281823 TTTTACCATTGAAAAAATTTGAAAGAAGTTGTCTTACCTTAGGAATACGAGATGATCCTC 281882 || |||||||| |||| | | | ||| ||||| ||||| || | || || | Sbjct 88046 CCTTTCCATTGAAGAAATCTTTGATCAATTGCTGCACCTTTGGAATGCGGGTGGAACCAC 88105 Query 281883 CAACTAATACAATTTCATGCACCTGTGATTTATCCAGTTTTGAATCCAATAAAACTTTTT 281942 |||||| ||||||||||| |||||| || | || | ||||||| ||||||||||| Sbjct 88106 CAACTAGGACAATTTCATGGACCTGTTCCTTTTTAAGATCTGAATCCTCTAAAACTTTTT 88165 Query 281943 CAACGGGTTCAAGACCAGCTCTAAACAAGTC--TGAACAAAGTTCTTCGAATTTAGCTCT 282000 || |||| | || | ||| | || || | |||||||| ||||| ||||| Sbjct 88166 GCACAGGTTTTAATGTTGCACGAAATAGATCCATGTTC--AGTTCTTCAAATTTGGCTCT 88223 Query 282001 AGTAAGAGTGACATTATAATCAATTCCTTCGAACAAAGAATCAACTTCAATCGTAGTTTG 282060 || || || || | | ||| || || | | ||| || ||||| ||| |||| || Sbjct 88224 GGTCAGTGTTTCAGAAAAGTCATCACCATCCATGATAGACTCCACTTCTATCTTAGTCTG 88283 Query 282061 A 282061 | Sbjct 88284 A 88284 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3740279021545482