Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyocaulus_20viviparus_20[genbank_20GCA_5F000816705.1_202015-03- 12] 7,157 sequences; 160,963,781 total letters Query= NC_024446.1 Length=306862 Score E Sequences producing significant alignments: (Bits) Value seq143 127 4e-24 seq9 125 1e-23 seq271 100 6e-16 >seq143 Length=269893 Score = 127 bits (140), Expect = 4e-24 Identities = 112/140 (80%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 82671 CCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTTGCT 82730 ||||| ||||| || | ||| || || ||||| |||||||| |||||||| ||||| || Sbjct 138258 CCAGCGAAGATCAGGCGTTGCTGGTCCGGAGGGATTCCTTCTTTATCTTGTATCTTAGCC 138199 Query 82731 TTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGTCAAC 82790 ||||||||||||||||| ||| | || || || | ||||| ||||| ||||||| | Sbjct 138198 TTTACATTTTCAATCGTGTCAGATGCCTCCACCTCTAGGGTTATTGTCTTTCCTGTCAGC 138139 Query 82791 GTCTTTACAAATATCTGCAT 82810 ||||||||||| || ||||| Sbjct 138138 GTCTTTACAAAAATTTGCAT 138119 Score = 118 bits (130), Expect = 2e-21 Identities = 110/140 (79%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 82671 CCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTTGCT 82730 |||||||| || |||| ||||||||||||||| || ||||||||||| |||||||| ||| Sbjct 137292 CCAGCAAAAATAAGTCGTTGTTGATCTGGAGGAATACCTTCCTTATCCTGAATCTTGGCT 137233 Query 82731 TTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGTCAAC 82790 || ||||| || || || || | ||| || || || || || |||||||| || | | Sbjct 137232 TTCACATTCTCGATTGTGTCGGACGCTTCGACCTCTAAGGTGATTGTCTTGCCAGTGAGC 137173 Query 82791 GTCTTTACAAATATCTGCAT 82810 || || || || |||||||| Sbjct 137172 GTTTTCACGAAAATCTGCAT 137153 Score = 114 bits (126), Expect = 3e-20 Identities = 110/141 (78%), Gaps = 0/141 (0%) Strand=Plus/Minus Query 82671 CCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTTGCT 82730 ||||||||||| || | || ||||| ||||| ||||||||||| ||||| ||||| || Sbjct 137941 CCAGCAAAGATAAGACGCTGCTGATCAGGAGGAATTCCTTCCTTGTCTTGGATCTTGGCC 137882 Query 82731 TTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGTCAAC 82790 || || || || || |||||| | || || |||| || |||||||| ||||| || Sbjct 137881 TTAACGTTCTCGATGGTATCAGATGCCTCAACCTCCAGTGTGATCGTCTTCCCTGTTAAT 137822 Query 82791 GTCTTTACAAATATCTGCATT 82811 ||||| ||||| ||||||||| Sbjct 137821 GTCTTAACAAAAATCTGCATT 137801 Score = 113 bits (124), Expect = 9e-20 Identities = 109/140 (78%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 82671 CCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTTGCT 82730 || || || || |||| |||||||| ||||| || ||||| || ||||||||||| ||| Sbjct 137614 CCTGCGAAAATGAGTCGCTGTTGATCAGGAGGAATGCCTTCTTTGTCTTGAATCTTGGCT 137555 Query 82731 TTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGTCAAC 82790 || ||||| ||||| |||||| | ||| ||||| | || || ||||| ||||| | Sbjct 137554 TTCACATTCTCAATAGTATCAGACGCTTCGACTTCAAGCGTGATTGTCTTCCCTGTGAGA 137495 Query 82791 GTCTTTACAAATATCTGCAT 82810 ||||| ||||| |||||||| Sbjct 137494 GTCTTCACAAAGATCTGCAT 137475 Score = 100 bits (110), Expect = 6e-16 Identities = 108/143 (76%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 82668 TTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTT 82727 || ||||| || || | | || ||||||||||| || |||||||| ||||||||||| Sbjct 138581 TTACCAGCGAATATCAAACGCTGCTGATCTGGAGGGATCCCTTCCTTGTCTTGAATCTTA 138522 Query 82728 GCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGTC 82787 ||||| ||||| ||||| || || | || ||||| | ||||| ||||| |||||| Sbjct 138521 GCTTTCACATTCTCAATTGTGTCCGACGCCTCGACTTCAAGGGTTATTGTCTTCCCTGTC 138462 Query 82788 AACGTCTTTACAAATATCTGCAT 82810 | ||||| || || || ||||| Sbjct 138461 AGAGTCTTCACGAAAATTTGCAT 138439 Score = 84.2 bits (92), Expect = 4e-11 Identities = 73/91 (80%), Gaps = 0/91 (0%) Strand=Plus/Minus Query 82582 TACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAG 82641 |||| || | | ||| ||||||||||| |||||||| |||||||| || |||||||||| Sbjct 138439 TACCACCACGAAGACGAAGAACTAAGTGGAGAGTAGACTCTTTCTGAATGTTATAATCAG 138380 Query 82642 ATAGAATTCTACCGTCTTCTAGTTGTTTTCC 82672 | ||| | | || || ||||||||||| || Sbjct 138379 AAAGAGTACGCCCATCCTCTAGTTGTTTACC 138349 >seq9 Length=784367 Score = 125 bits (138), Expect = 1e-23 Identities = 114/141 (81%), Gaps = 2/141 (1%) Strand=Plus/Minus Query 82671 CCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTTGCT 82730 || || || |||||||||||||| ||||| || || |||||||||||||| || || | Sbjct 114612 CCCGCGAAAATTAGTCTTTGTTGGTCTGGTGGGATACCTTCCTTATCTTGTATTTTCGTC 114553 Query 82731 TTTACATTTTCAATCGTATCATTAGG-TTCTACTTCCAAAGTTATCGTCTTGCCTGTCAA 82789 || ||||||||||| || || | ||| || |||||||| || |||||||| ||||| | Sbjct 114552 TTCACATTTTCAATAGTGTC-TGAGGCCTCAACTTCCAACGTGATCGTCTTTCCTGTTAG 114494 Query 82790 CGTCTTTACAAATATCTGCAT 82810 |||||| |||||||| ||||| Sbjct 114493 CGTCTTCACAAATATTTGCAT 114473 Score = 122 bits (134), Expect = 2e-22 Identities = 111/140 (79%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 82671 CCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTTGCT 82730 |||||||| ||||| | ||||||||||| || |||||||| || |||||||| |||||| Sbjct 113837 CCAGCAAAAATTAGCCGCTGTTGATCTGGTGGGATTCCTTCTTTGTCTTGAATTTTTGCT 113778 Query 82731 TTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGTCAAC 82790 || ||||| ||||| || || || ||| ||||| | ||| || || || || ||||| Sbjct 113777 TTCACATTCTCAATTGTGTCTGAAGCTTCCACTTCAAGAGTGATAGTTTTACCAGTCAAG 113718 Query 82791 GTCTTTACAAATATCTGCAT 82810 || || ||||| |||||||| Sbjct 113717 GTTTTGACAAAAATCTGCAT 113698 Score = 105 bits (116), Expect = 1e-17 Identities = 109/143 (76%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 82668 TTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTT 82727 || |||||||| || | | |||||||| || || |||||||| ||||||||||| ||| Sbjct 113234 TTACCAGCAAATATCAAGCGCTGTTGATCCGGTGGAATTCCTTCTTTATCTTGAATTTTT 113175 Query 82728 GCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGTC 82787 ||||| ||||| ||||| || || | ||| || || | || |||||||| || || Sbjct 113174 GCTTTCACATTCTCAATTGTGTCGGAGGCTTCAACCTCTAGTGTAATCGTCTTCCCGGTA 113115 Query 82788 AACGTCTTTACAAATATCTGCAT 82810 | || || |||||||||||||| Sbjct 113114 AGTGTTTTCACAAATATCTGCAT 113092 >seq271 Length=165737 Score = 100 bits (110), Expect = 6e-16 Identities = 106/140 (76%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 82671 CCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTTGCT 82730 || || ||||| | | |||||| |||||||| || |||||||||||||| ||||||||| Sbjct 44782 CCGGCGAAGATCAACCGTTGTTGGTCTGGAGGAATGCCTTCCTTATCTTGGATCTTTGCT 44723 Query 82731 TTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGTCAAC 82790 || ||||| ||||| || ||| | || ||||| | ||| || || || || || | Sbjct 44722 TTAACATTCTCAATGGTGTCAGAGGCCTCCACTTCAAGAGTGATAGTTTTTCCAGTAAGA 44663 Query 82791 GTCTTTACAAATATCTGCAT 82810 ||||| || || || ||||| Sbjct 44662 GTCTTCACGAAAATTTGCAT 44643 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 981737167366223