Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyocaulus_20viviparus_20[genbank_20GCA_5F000816705.1_202015-03- 12] 7,157 sequences; 160,963,781 total letters Query= NC_025257.1 Length=102759 Score E Sequences producing significant alignments: (Bits) Value seq9 86.0 4e-12 >seq9 Length=784367 Score = 86.0 bits (94), Expect = 4e-12 Identities = 110/149 (74%), Gaps = 2/149 (1%) Strand=Plus/Minus Query 33602 ATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGCAA 33661 |||| || || ||||||||||| | |||||||||| | || | ||||||||||| || Sbjct 113549 ATTGATTACCTGCAAAAATCAATCTCTGCTGATCTGGTGGGATTCCTTCTTTGTCTTGAA 113490 Query 33662 TTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCACGTCAACCGTGATCGTTTTA 33720 |||| || | || | || | ||||| | |||||| |||| ||||| |||||| Sbjct 113489 TTTT-TGCCTTTACGTTCTCAATCGTGTCTGAAGCTTCCACTTCAAGAGTGATAGTTTTA 113431 Query 33721 CCTGTTAACGTTTTTACAAAGATCTGCAT 33749 || |||| ||||| ||||| || ||||| Sbjct 113430 CCAGTTAGAGTTTTGACAAAAATTTGCAT 113402 Score = 86.0 bits (94), Expect = 4e-12 Identities = 105/141 (74%), Gaps = 2/141 (1%) Strand=Plus/Minus Query 33610 CCGGCAAAAATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGCAATTTTCTGT 33669 || |||||||| | ||||| |||||| | || | ||||||||||| |||||| || Sbjct 113837 CCAGCAAAAATTAGCCGCTGTTGATCTGGTGGGATTCCTTCTTTGTCTTGAATTTT-TGC 113779 Query 33670 TTCAACATAGTC-ACGGTGTCGCTTGATTCCACGTCAACCGTGATCGTTTTACCTGTTAA 33728 || |||| || | ||||| | |||||| |||| ||||| |||||||| || || Sbjct 113778 TTTCACATTCTCAATTGTGTCTGAAGCTTCCACTTCAAGAGTGATAGTTTTACCAGTCAA 113719 Query 33729 CGTTTTTACAAAGATCTGCAT 33749 ||||| ||||| |||||||| Sbjct 113718 GGTTTTGACAAAAATCTGCAT 113698 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 328675328485440