Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyocaulus_20viviparus_20[genbank_20GCA_5F000816705.1_202015-03- 12] 7,157 sequences; 160,963,781 total letters Query= NC_026440.1 Length=2243109 Score E Sequences producing significant alignments: (Bits) Value seq428 102 1e-15 >seq428 Length=103070 Score = 102 bits (112), Expect = 1e-15 Identities = 128/176 (73%), Gaps = 0/176 (0%) Strand=Plus/Minus Query 724965 AAGTCCATGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAG 725024 ||| | ||||| |||||||||||||| || |||||| || |||| || |||| |||| Sbjct 46026 AAGGCAATGTCCATCATGAACTCGTTCGTGAACGACGTGTTCGAACGAATCGCTGCCGAA 45967 Query 725025 GCCGGTCGCCTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACC 725084 || ||||| || | || |||||||||| ||||| | ||||| || ||||| Sbjct 45966 GCATCACGCCTTGCCCACTACAACAAGCGCTCAACGATTTCATCCCGCGAAATTCAGACG 45907 Query 725085 GCCGTGCGCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCAC 725140 || || || |||||| | | || || || |||| ||| ||||| || || ||||| Sbjct 45906 GCTGTCCGGCTGATCCTTCCAGGAGAGCTCGCCAAGCATGCCGTGTCGGAAGGCAC 45851 Score = 100 bits (110), Expect = 4e-15 Identities = 124/170 (73%), Gaps = 0/170 (0%) Strand=Plus/Minus Query 724971 ATGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGT 725030 ||||| |||||||||||||| || |||||| || |||| || |||| |||| || Sbjct 54387 ATGTCCATCATGAACTCGTTCGTGAACGACGTGTTCGAACGAATCGCTGCCGAAGCATCA 54328 Query 725031 CGCCTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTG 725090 ||||| || | || |||||||||| || || | |||||||| ||||| || || Sbjct 54327 CGCCTTGCCCACTACAACAAGCGCTCGACAATTTCATCCCGCGAGATTCAGACGGCTGTC 54268 Query 725091 CGCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCAC 725140 || |||||| | | || || || |||| ||| ||||| || || ||||| Sbjct 54267 CGACTGATCCTTCCAGGGGAGCTCGCCAAGCATGCCGTGTCAGAAGGCAC 54218 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7177120894195434