Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyocaulus_20viviparus_20[genbank_20GCA_5F000816705.1_202015-03- 12] 7,157 sequences; 160,963,781 total letters Query= NC_026922.1 Length=157977 Score E Sequences producing significant alignments: (Bits) Value seq9 123 3e-23 seq143 91.5 1e-13 seq271 82.4 8e-11 >seq9 Length=784367 Score = 123 bits (136), Expect = 3e-23 Identities = 115/146 (79%), Gaps = 0/146 (0%) Strand=Plus/Minus Query 134568 TGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGAATT 134627 || || |||||||||||||| | ||||||||| || || || |||||||| ||||||||| Sbjct 113547 TGATTACCTGCAAAAATCAATCTCTGCTGATCTGGTGGGATTCCTTCTTTGTCTTGAATT 113488 Query 134628 TTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTAATGGTTTTACCG 134687 ||| || || || | ||||| || | |||||| || ||||| || |||||||| Sbjct 113487 TTTGCCTTTACGTTCTCAATCGTGTCTGAAGCTTCCACTTCAAGAGTGATAGTTTTACCA 113428 Query 134688 GTTAAAGTTTTAACGAAAATTTGCAT 134713 |||| |||||| || ||||||||||| Sbjct 113427 GTTAGAGTTTTGACAAAAATTTGCAT 113402 Score = 109 bits (120), Expect = 6e-19 Identities = 108/140 (77%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 134574 CCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGAATTTTTTGT 134633 || |||||||| | ||||| ||||| || || || |||||||| |||||||||||| | Sbjct 113837 CCAGCAAAAATTAGCCGCTGTTGATCTGGTGGGATTCCTTCTTTGTCTTGAATTTTTGCT 113778 Query 134634 TTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTAATGGTTTTACCGGTTAAA 134693 || || || | |||||| || | |||||| || ||||| || |||||||| || || Sbjct 113777 TTCACATTCTCAATTGTGTCTGAAGCTTCCACTTCAAGAGTGATAGTTTTACCAGTCAAG 113718 Query 134694 GTTTTAACGAAAATTTGCAT 134713 ||||| || ||||| ||||| Sbjct 113717 GTTTTGACAAAAATCTGCAT 113698 Score = 100 bits (110), Expect = 3e-16 Identities = 108/143 (76%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 134571 TTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGAATTTTT 134630 || || ||||| ||||| ||||| ||||| || || || |||||||| |||||||||||| Sbjct 113234 TTACCAGCAAATATCAAGCGCTGTTGATCCGGTGGAATTCCTTCTTTATCTTGAATTTTT 113175 Query 134631 TGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTAATGGTTTTACCGGTT 134690 ||| || || | ||||||||| | ||| || || || ||||| || || ||||| Sbjct 113174 GCTTTCACATTCTCAATTGTGTCGGAGGCTTCAACCTCTAGTGTAATCGTCTTCCCGGTA 113115 Query 134691 AAAGTTTTAACGAAAATTTGCAT 134713 | ||||| || || || ||||| Sbjct 113114 AGTGTTTTCACAAATATCTGCAT 113092 >seq143 Length=269893 Score = 91.5 bits (100), Expect = 1e-13 Identities = 106/143 (74%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 134571 TTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGAATTTTT 134630 || || || || ||||||||||||||||| || || || ||||| || |||||||| || Sbjct 138581 TTACCAGCGAATATCAAACGCTGCTGATCTGGAGGGATCCCTTCCTTGTCTTGAATCTTA 138522 Query 134631 TGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTAATGGTTTTACCGGTT 134690 ||| || || | |||||| |||| || || || || || || || || || || Sbjct 138521 GCTTTCACATTCTCAATTGTGTCCGACGCCTCGACTTCAAGGGTTATTGTCTTCCCTGTC 138462 Query 134691 AAAGTTTTAACGAAAATTTGCAT 134713 | ||| || |||||||||||||| Sbjct 138461 AGAGTCTTCACGAAAATTTGCAT 138439 >seq271 Length=165737 Score = 82.4 bits (90), Expect = 8e-11 Identities = 102/140 (73%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 134574 CCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGAATTTTTTGT 134633 || || || ||||| || || || || || || |||||||| || ||||| || ||| | Sbjct 44782 CCGGCGAAGATCAACCGTTGTTGGTCTGGAGGAATGCCTTCCTTATCTTGGATCTTTGCT 44723 Query 134634 TTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTAATGGTTTTACCGGTTAAA 134693 || || || | ||||| || | ||||| || ||||| || ||||| || || | | Sbjct 44722 TTAACATTCTCAATGGTGTCAGAGGCCTCCACTTCAAGAGTGATAGTTTTTCCAGTAAGA 44663 Query 134694 GTTTTAACGAAAATTTGCAT 134713 || || |||||||||||||| Sbjct 44662 GTCTTCACGAAAATTTGCAT 44643 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 505353185795640