Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyocaulus_20viviparus_20[genbank_20GCA_5F000816705.1_202015-03- 12] 7,157 sequences; 160,963,781 total letters Query= NC_027213.1 Length=214699 Score E Sequences producing significant alignments: (Bits) Value seq919 116 5e-21 >seq919 Length=24097 Score = 116 bits (128), Expect = 5e-21 Identities = 118/154 (77%), Gaps = 0/154 (0%) Strand=Plus/Minus Query 70351 GTTTCCTTGTGTAAATTTGATATGGCTATTCTGGCTGCTAGAATAGCATAGTCAGGATGT 70410 |||| |||||||||||| || | |||||||| ||||| ||||| ||||| |||||||| Sbjct 19342 GTTTTCTTGTGTAAATTCGAAACAGCTATTCTAGCTGCAAGAATGGCATAATCAGGATGC 19283 Query 70411 TGTGTAGTACAAGTAGCTGCTATTTCCGCAGCTAACGTATCTAATTCTATAGTTGTAACT 70470 ||||| || | ||| || |||| || || || |||| ||||| ||||| |||| Sbjct 19282 TGTGTGGTCATTGAAGCAGCGGTTTCAGCTGCCAAGTTATCCAATTCAGCAGTTGAAACT 19223 Query 70471 CCGTTATATAGCCCTTGAATAACTTTCATGGCTA 70504 || |||||||| || ||||||||||| |||| Sbjct 19222 CCTTTATATAGACCGCCTATAACTTTCATTGCTA 19189 Score = 100 bits (110), Expect = 4e-16 Identities = 115/155 (74%), Gaps = 0/155 (0%) Strand=Plus/Minus Query 68698 AGGAGATGCGGATTAACTATTTGAAATTCCCCAGATAACACTCTACGAGTGTAAATATTA 68757 || || || || || || |||||||| || || || | |||||| | | || || || Sbjct 22285 AGCAGGTGTGGGTTTACAATTTGAAAATCACCCGAAAGCACTCTTCTGCTATATATGTTC 22226 Query 68758 CTGGTATATGGTTCCACAGATTCATTATTTCCCAGAATTTGAGCAGTTGATGCAGTTGGC 68817 || || ||||| || ||||| ||||| |||| |||||| || ||||| ||||||||| Sbjct 22225 GAAGTGTACGGTTCAACTGATTCGTTATTACCCAAAATTTGGGCTGTTGAAGCAGTTGGC 22166 Query 68818 ATAGGTGCCACCAATAAACTATTTCTAAGACCATG 68852 || || || ||||| ||||| || | || |||||| Sbjct 22165 ATTGGGGCAACCAACAAACTGTTACGAATACCATG 22131 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 686847347421480