Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyocaulus_20viviparus_20[genbank_20GCA_5F000816705.1_202015-03- 12] 7,157 sequences; 160,963,781 total letters Query= NC_027923.1 Length=132831 Score E Sequences producing significant alignments: (Bits) Value seq919 87.8 2e-12 seq143 86.0 5e-12 >seq919 Length=24097 Score = 87.8 bits (96), Expect = 2e-12 Identities = 98/131 (75%), Gaps = 0/131 (0%) Strand=Plus/Minus Query 131603 GGACATTCGCTGGGACACATTAGCGACCACACGCCGTTCTGTTCAACTCGCTTCATAAAC 131662 |||||||| | |||||||||| |||||| | || |||||||| |||||||| || Sbjct 20902 GGACATTCATTCGGACACATTAAGGACCACTCTAGGTCATGTTCAACCCGCTTCATGAAA 20843 Query 131663 AAATCCGGCACCCATAACGCGTACAACAGATCTCTAGCTTTTTTCTCTTCTGTACCCATA 131722 | || ||||||||||| || || |||||||||| ||| | ||||||| ||| || Sbjct 20842 AGGTCTGGCACCCATAAAGCATAAAACAGATCTCGAGCACGCTCTTCTTCTGGACCAGTA 20783 Query 131723 AtttttttCAA 131733 | || ||||| Sbjct 20782 TTCTTCTTCAA 20772 >seq143 Length=269893 Score = 86.0 bits (94), Expect = 5e-12 Identities = 104/142 (73%), Gaps = 0/142 (0%) Strand=Plus/Minus Query 27107 ACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTTGTT 27166 ||| ||| ||||||| ||||||||||| || || | || ||||| || |||||| Sbjct 137615 ACCTGCGAAAATGAGTCGCTGTTGATCAGGAGGAATGCCTTCTTTGTCTTGAATCTTGGC 137556 Query 27167 TTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGTCAG 27226 ||||| | || | ||| || | ||||| ||||| || || || | || || || || Sbjct 137555 TTTCACATTCTCAATAGTATCAGACGCTTCGACTTCAAGCGTGATTGTCTTCCCTGTGAG 137496 Query 27227 AGTTTTCACAAAGATTTGCATA 27248 ||| ||||||||||| |||||| Sbjct 137495 AGTCTTCACAAAGATCTGCATA 137474 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 424897334698584