Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyocaulus_20viviparus_20[genbank_20GCA_5F000816705.1_202015-03- 12] 7,157 sequences; 160,963,781 total letters Query= NC_028112.1 Length=178262 Score E Sequences producing significant alignments: (Bits) Value seq919 122 1e-22 seq143 116 4e-21 seq9 104 3e-17 seq271 93.3 5e-14 >seq919 Length=24097 Score = 122 bits (134), Expect = 1e-22 Identities = 257/376 (68%), Gaps = 8/376 (2%) Strand=Plus/Minus Query 81379 CCACCCTGGTTGACGTAACGGGCAGTCGCGTTAAATACACGCAACATAGGGATGATACCA 81438 ||||| || | || || || ||||| ||| ||||||||| ||| || | | |||| Sbjct 20642 CCACCTTGATCAACATATCGAGCAGTATTGTTGTATACACGCAGCATTGGAACCAAACCA 20583 Query 81439 TCTGACTGACCGTTCGTACCCACGATACGCGACCCCTTGGCGCGCACCTT--GCTGATTG 81496 | || ||| || ||||| | || ||| || | || | | ||| || ||| Sbjct 20582 TTGGAAGTACCATTAGTACCGCCAATCAACGAACCAGTAGCCCTAATCTTATGCACATTC 20523 Query 81497 AAAGACCGATGCCACCTGACCACTTTGAAATCTGAGCACACCGGTTCATGGTCTCATAAA 81556 || ||||| ||||| | | ||||| ||| ||||||| | || | || ||||| | Sbjct 20522 AAG--CCGATTCCACCGGCACTTTTTGAGATCAAAGCACACTGCTTTAGCGTATCATATA 20465 Query 81557 TTCCCTCGATGCTATCTTTTTTCAT-GTCAAGCAAGAAACAGCTTGACATCTGAGGGCTT 81615 | ||| | ||| ||||| |||| ||||| |||||| || || | || || | Sbjct 20464 TCCCCGCAATGGAATCTTCACTCATAGTCAA-CAAGAAGCACGAAGAAAGTTGTGGCCAA 20406 Query 81616 TTTGAGCCGGCATTGAACAGTGTTGGGGTCGCGTGAATGAAATAACGGTTTGACATCAGG 81675 |||| || ||||||||||| ||||| | ||| ||| ||||||| || | |||||| Sbjct 20405 TTTGTTCCTGCATTGAACAGCGTTGGTGACGCATGAGTGAAATATCGTTCACTCATCAGA 20346 Query 81676 TCATAGGTTTC-CTTGACGCGTGGAATATCGTCACCGTGAATACCGATAGCTACACGCAT 81734 | |||||||| ||| ||||| | ||||| ||||| || || || || || |||||||| Sbjct 20345 TTGTAGGTTTCAATTGCCGCGTCG-ATATCTTCACCATGGATGCCTATTGCAACACGCAT 20287 Query 81735 AAACATGTACTGGGGC 81750 | ||| | ||| ||| Sbjct 20286 GAGCATATGCTGTGGC 20271 >seq143 Length=269893 Score = 116 bits (128), Expect = 4e-21 Identities = 111/142 (78%), Gaps = 0/142 (0%) Strand=Plus/Plus Query 27405 AATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGG 27464 |||||| || ||||| ||||| | || || ||||| || || || ||||||||| || Sbjct 137801 AATGCAGATTTTTGTTAAGACATTAACAGGGAAGACGATCACACTGGAGGTTGAGGCATC 137860 Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCA 27524 ||||| ||| | || | ||||| || || || |||||||| ||||||||||| || || Sbjct 137861 TGATACCATCGAGAACGTTAAGGCCAAGATCCAAGACAAGGAAGGAATTCCTCCTGATCA 137920 Query 27525 GCAGCGTCTAATTTTTGCTGGT 27546 ||||||||| || ||||||||| Sbjct 137921 GCAGCGTCTTATCTTTGCTGGT 137942 Score = 89.7 bits (98), Expect = 6e-13 Identities = 106/144 (74%), Gaps = 0/144 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| || || || || ||||| || |||||||| || || | ||||| || | Sbjct 137153 ATGCAGATTTTCGTGAAAACGCTCACTGGCAAGACAATCACCTTAGAGGTCGAAGCGTCC 137212 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | || | ||| |||| || || |||||||| ||||| || ||||||||||| || Sbjct 137213 GACACAATCGAGAATGTGAAAGCCAAGATTCAGGATAAGGAAGGTATTCCTCCAGATCAA 137272 Query 27526 CAGCGTCTAATTTTTGCTGGTAAG 27549 || || || |||||||||||| || Sbjct 137273 CAACGACTTATTTTTGCTGGTGAG 137296 >seq9 Length=784367 Score = 104 bits (114), Expect = 3e-17 Identities = 110/145 (76%), Gaps = 0/145 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| || |||||||| || | || || || ||||| |||||||| || || | Sbjct 113698 ATGCAGATTTTTGTCAAAACCTTGACTGGTAAAACTATCACTCTTGAAGTGGAAGCTTCA 113757 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | |||| ||| |||| || |||||||| ||||| || ||||| || ||||| || Sbjct 113758 GACACAATTGAGAATGTGAAAGCAAAAATTCAAGACAAAGAAGGAATCCCACCAGATCAA 113817 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGC 27550 ||||| |||||||||||||||| || Sbjct 113818 CAGCGGCTAATTTTTGCTGGTAGGC 113842 Score = 100 bits (110), Expect = 3e-16 Identities = 108/143 (76%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| || ||||| || || |||||||| ||||| ||||| || |||||||| | Sbjct 113092 ATGCAGATATTTGTGAAAACACTTACCGGGAAGACGATTACACTAGAGGTTGAAGCCTCC 113151 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | |||| ||| |||| || |||||||| || || || |||||||| || || || Sbjct 113152 GACACAATTGAGAATGTGAAAGCAAAAATTCAAGATAAAGAAGGAATTCCACCGGATCAA 113211 Query 27526 CAGCGTCTAATTTTTGCTGGTAA 27548 ||||| | || ||||||||||| Sbjct 113212 CAGCGCTTGATATTTGCTGGTAA 113234 >seq271 Length=165737 Score = 93.3 bits (102), Expect = 5e-14 Identities = 105/141 (74%), Gaps = 0/141 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 |||||||| || || ||||| ||||| || || ||||| |||||||| || ||| | | Sbjct 44643 ATGCAAATTTTCGTGAAGACTCTTACTGGAAAAACTATCACTCTTGAAGTGGAGGCCTCT 44702 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | ||||| ||| | || || || || || || ||||| || |||||||||||||| Sbjct 44703 GACACCATTGAGAATGTTAAAGCAAAGATCCAAGATAAGGAAGGCATTCCTCCAGACCAA 44762 Query 27526 CAGCGTCTAATTTTTGCTGGT 27546 || || | || || || ||| Sbjct 44763 CAACGGTTGATCTTCGCCGGT 44783 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 570259378605840