Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyocaulus_20viviparus_20[genbank_20GCA_5F000816705.1_202015-03- 12] 7,157 sequences; 160,963,781 total letters Query= NC_028491.1 Length=98392 Score E Sequences producing significant alignments: (Bits) Value seq9 93.3 3e-14 >seq9 Length=784367 Score = 93.3 bits (102), Expect = 3e-14 Identities = 110/144 (76%), Gaps = 4/144 (3%) Strand=Plus/Minus Query 34565 TACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCCTTGTCTGTGATCTTTT 34624 |||| ||||| |||| |||||||| || || || | ||| || |||||| ||| |||| Sbjct 113839 TACCAGCAAAAATTAGCCGCTGTTGATCTGGTGGGATTCCTTCTTTGTCT-TGAATTTTT 113781 Query 34625 GTTTTAACGATAA-AATTGTGTCTTC-GCTCTCCACTTCCACGGTTATCGTTTTACCGGT 34682 | ||| || | |||||||||| ||| |||||||| | || || |||||||| || Sbjct 113780 GCTTTCACATTCTCAATTGTGTCTGAAGCT-TCCACTTCAAGAGTGATAGTTTTACCAGT 113722 Query 34683 TAACGTTTTCACAAAAATCTGCAT 34706 || ||||| |||||||||||||| Sbjct 113721 CAAGGTTTTGACAAAAATCTGCAT 113698 Score = 86.0 bits (94), Expect = 4e-12 Identities = 110/149 (74%), Gaps = 2/149 (1%) Strand=Plus/Minus Query 34564 TTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCCTTGTCTGTGATCTTT 34623 ||||| |||||||| || |||||||| ||||| || | ||| || || ||| ||| ||| Sbjct 113234 TTACCAGCAAATATCAAGCGCTGTTGATCCGGTGGAATTCCTTCTTTATCT-TGAATTTT 113176 Query 34624 TGTTTTAACGATAA-AATTGTGTCTTCGCTCTCCACTTCCACGGTTATCGTTTTACCGGT 34682 || ||| || | ||||||||| | || || || | || ||||| || ||||| Sbjct 113175 TGCTTTCACATTCTCAATTGTGTCGGAGGCTTCAACCTCTAGTGTAATCGTCTTCCCGGT 113116 Query 34683 TAACGTTTTCACAAAAATCTGCATGTTGA 34711 | ||||||||||| ||||||||| ||| Sbjct 113115 AAGTGTTTTCACAAATATCTGCATGCTGA 113087 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 314702147415581