Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyocaulus_20viviparus_20[genbank_20GCA_5F000816705.1_202015-03- 12] 7,157 sequences; 160,963,781 total letters Query= NC_028636.1 Length=135952 Score E Sequences producing significant alignments: (Bits) Value seq9 129 5e-25 seq143 109 5e-19 seq271 95.1 1e-14 >seq9 Length=784367 Score = 129 bits (142), Expect = 5e-25 Identities = 109/134 (81%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 26987 CATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTC 27046 ||||||||||||||| ||||| || ||||| ||| | ||||| || || || ||| | || Sbjct 113091 CATGCAGATATTTGTGAAAACACTTACCGGGAAGACGATTACACTAGAGGTTGAAGCCTC 113150 Query 27047 CGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCA 27106 |||| | ||||||| || ||| |||||||||||| |||||||| || ||||| ||||| Sbjct 113151 CGACACAATTGAGAATGTGAAAGCAAAAATTCAAGATAAAGAAGGAATTCCACCGGATCA 113210 Query 27107 ACAGCGTTTAATAT 27120 |||||| || |||| Sbjct 113211 ACAGCGCTTGATAT 113224 Score = 129 bits (142), Expect = 5e-25 Identities = 107/131 (82%), Gaps = 0/131 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| ||||| ||||| |||| || || |||| ||||||||||||||| | || Sbjct 113698 ATGCAGATTTTTGTCAAAACCTTGACTGGTAAAACTATCACTCTTGAAGTGGAAGCTTCA 113757 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | ||||||| || ||| ||||||||||||||||||||| || ||||| |||||| Sbjct 113758 GACACAATTGAGAATGTGAAAGCAAAAATTCAAGACAAAGAAGGAATCCCACCAGATCAA 113817 Query 27108 CAGCGTTTAAT 27118 ||||| |||| Sbjct 113818 CAGCGGCTAAT 113828 Score = 123 bits (136), Expect = 2e-23 Identities = 116/148 (78%), Gaps = 0/148 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 ||||| || ||||| |||||||| || || || |||| ||||||||||||||| | || Sbjct 113402 ATGCAAATTTTTGTCAAAACTCTAACTGGTAAAACTATCACTCTTGAAGTGGAAGCTTCA 113461 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| ||||||||| || || ||||||||||||||||||||| || ||||| ||||| Sbjct 113462 GACACGATTGAGAACGTAAAGGCAAAAATTCAAGACAAAGAAGGAATCCCACCAGATCAG 113521 Query 27108 CAGCGTTTAATATACGCCGGCAAACAAT 27135 ||| | || || | || || || |||| Sbjct 113522 CAGAGATTGATTTTTGCAGGTAATCAAT 113549 >seq143 Length=269893 Score = 109 bits (120), Expect = 5e-19 Identities = 99/125 (79%), Gaps = 0/125 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| ||||| || ||||| || || ||| | || || |||||||| ||| |||| Sbjct 137475 ATGCAGATCTTTGTGAAGACTCTCACAGGGAAGACAATCACGCTTGAAGTCGAAGCGTCT 137534 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 || | ||||||| || ||| || |||||||||||||||||||| || || |||||| Sbjct 137535 GATACTATTGAGAATGTGAAAGCCAAGATTCAAGACAAAGAAGGCATTCCTCCTGATCAA 137594 Query 27108 CAGCG 27112 ||||| Sbjct 137595 CAGCG 137599 Score = 105 bits (116), Expect = 6e-18 Identities = 109/143 (76%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 ||||| || || || || |||||||| || ||| | || || |||||||| || |||| Sbjct 138439 ATGCAAATTTTCGTGAAGACTCTGACAGGGAAGACAATAACCCTTGAAGTCGAGGCGTCG 138498 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | ||||||| || ||| || ||||||||||| ||||| || || || ||||| Sbjct 138499 GACACAATTGAGAATGTGAAAGCTAAGATTCAAGACAAGGAAGGGATCCCTCCAGATCAG 138558 Query 27108 CAGCGTTTAATATACGCCGGCAA 27130 |||||||| |||| ||| || || Sbjct 138559 CAGCGTTTGATATTCGCTGGTAA 138581 >seq271 Length=165737 Score = 95.1 bits (104), Expect = 1e-14 Identities = 105/140 (75%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 ||||| || || || || ||||| || || || |||| |||||||||||||| | || Sbjct 44643 ATGCAAATTTTCGTGAAGACTCTTACTGGAAAAACTATCACTCTTGAAGTGGAGGCCTCT 44702 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | ||||||| || ||| ||| || ||||| || |||||||| || || || ||| Sbjct 44703 GACACCATTGAGAATGTTAAAGCAAAGATCCAAGATAAGGAAGGCATTCCTCCAGACCAA 44762 Query 27108 CAGCGTTTAATATACGCCGG 27127 || || || || | |||||| Sbjct 44763 CAACGGTTGATCTTCGCCGG 44782 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 434879491112640