Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyocaulus_20viviparus_20[genbank_20GCA_5F000816705.1_202015-03- 12] 7,157 sequences; 160,963,781 total letters Query= NC_029692.1 Length=362276 Score E Sequences producing significant alignments: (Bits) Value seq143 123 6e-23 seq271 118 2e-21 seq9 95.1 3e-14 >seq143 Length=269893 Score = 123 bits (136), Expect = 6e-23 Identities = 112/141 (79%), Gaps = 0/141 (0%) Strand=Plus/Minus Query 210975 CCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTTTGT 211034 || || |||||||| || || || |||||||||| |||||||||||| |||||||| Sbjct 137941 CCAGCAAAGATAAGACGCTGCTGATCAGGAGGAATTCCTTCCTTGTCTTGGATCTTGGCC 137882 Query 211035 TTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGTGAGA 211094 || ||||| |||||||| ||||| |||||||| || ||||||||||| || || | Sbjct 137881 TTAACGTTCTCGATGGTATCAGATGCCTCAACCTCCAGTGTGATCGTCTTCCCTGTTAAT 137822 Query 211095 GTCTTTACAAACACCTGCATT 211115 ||||| ||||| | ||||||| Sbjct 137821 GTCTTAACAAAAATCTGCATT 137801 Score = 113 bits (124), Expect = 1e-19 Identities = 109/140 (78%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 210975 CCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTTTGT 211034 |||||||| || || || ||||| |||||||||| ||||| ||||| || ||||| | Sbjct 137614 CCTGCGAAAATGAGTCGCTGTTGATCAGGAGGAATGCCTTCTTTGTCTTGAATCTTGGCT 137555 Query 211035 TTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGTGAGA 211094 ||||| || || || || ||||| ||| || || || ||||| ||||| || |||||| Sbjct 137554 TTCACATTCTCAATAGTATCAGACGCTTCGACTTCAAGCGTGATTGTCTTCCCTGTGAGA 137495 Query 211095 GTCTTTACAAACACCTGCAT 211114 ||||| ||||| | |||||| Sbjct 137494 GTCTTCACAAAGATCTGCAT 137475 Score = 104 bits (114), Expect = 5e-17 Identities = 107/140 (76%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 210975 CCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTTTGT 211034 || |||||||| |||||||| ||||| ||||| | |||||| || || || ||||| Sbjct 138258 CCAGCGAAGATCAGGCGTTGCTGGTCCGGAGGGATTCCTTCTTTATCTTGTATCTTAGCC 138199 Query 211035 TTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGTGAGA 211094 || || ||||| || |||||||| || ||||| || || || |||||||| || || Sbjct 138198 TTTACATTTTCAATCGTGTCAGATGCCTCCACCTCTAGGGTTATTGTCTTTCCTGTCAGC 138139 Query 211095 GTCTTTACAAACACCTGCAT 211114 ||||||||||| | ||||| Sbjct 138138 GTCTTTACAAAAATTTGCAT 138119 >seq271 Length=165737 Score = 118 bits (130), Expect = 2e-21 Identities = 110/140 (79%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 210975 CCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTTTGT 211034 || |||||||| | ||||||||||| ||||||| |||||||| || ||||||||| | Sbjct 44782 CCGGCGAAGATCAACCGTTGTTGGTCTGGAGGAATGCCTTCCTTATCTTGGATCTTTGCT 44723 Query 211035 TTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGTGAGA 211094 || || || || |||||||||||| || || || |||||||| || ||||| || ||| Sbjct 44722 TTAACATTCTCAATGGTGTCAGAGGCCTCCACTTCAAGAGTGATAGTTTTTCCAGTAAGA 44663 Query 211095 GTCTTTACAAACACCTGCAT 211114 ||||| || || | ||||| Sbjct 44662 GTCTTCACGAAAATTTGCAT 44643 >seq9 Length=784367 Score = 95.1 bits (104), Expect = 3e-14 Identities = 107/141 (76%), Gaps = 2/141 (1%) Strand=Plus/Minus Query 210975 CCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTTTGT 211034 || ||||| || || | ||||||||| || || | |||||||| || || || ||| || Sbjct 114612 CCCGCGAAAATTAGTCTTTGTTGGTCTGGTGGGATACCTTCCTTATCTTGTAT-TTTCGT 114554 Query 211035 -TTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGTGAG 211093 ||||| ||||| || ||||| ||| ||||| || | |||||||||||||| || || Sbjct 114553 CTTCACATTTTCAATAGTGTCTGAGGCCTCAACTTCCAACGTGATCGTCTTTCCTGTTAG 114494 Query 211094 AGTCTTTACAAACACCTGCAT 211114 ||||| ||||| | ||||| Sbjct 114493 CGTCTTCACAAATATTTGCAT 114473 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1159045706848305