Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyocaulus_20viviparus_20[genbank_20GCA_5F000816705.1_202015-03- 12] 7,157 sequences; 160,963,781 total letters Query= NC_029997.1 Length=105667 Score E Sequences producing significant alignments: (Bits) Value seq9 104 2e-17 >seq9 Length=784367 Score = 104 bits (114), Expect = 2e-17 Identities = 109/141 (77%), Gaps = 2/141 (1%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||||||||| || |||||| | || || ||||| |||||||| ||||| || | | Sbjct 113698 ATGCAGATTTTTGTCAAAACCTTGACTGGTAAAACTATCACTCTTGAAGTGGAAGCTTCA 113757 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 ||||| |||| ||| | ||| | ||||||| ||||||||||| | || |||||||| Sbjct 113758 GACACAATTGAGAATGTGAAAGC-AAAAATTCAAGACAAAGAAGGAATCCCACCAGATCA 113816 Query 23730 ACAGCGTTTAATATTTGCCGG 23750 |||||| |||| ||||| || Sbjct 113817 ACAGCGGCTAATTTTTGCTGG 113837 Score = 91.5 bits (100), Expect = 1e-13 Identities = 108/144 (75%), Gaps = 2/144 (1%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| || || ||||| || || || || ||||| || || || ||||| || | Sbjct 113092 ATGCAGATATTTGTGAAAACACTTACCGGGAAGACGATTACACTAGAGGTTGAAGCCTCC 113151 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 ||||| |||| ||| | ||| |||||| || || |||||||| | || || ||||| Sbjct 113152 GACACAATTGAGAATGTGAAAGCAAAAA-TTCAAGATAAAGAAGGAATTCCACCGGATCA 113210 Query 23730 ACAGCGTTTAATATTTGCCGGCAA 23753 |||||| || |||||||| || || Sbjct 113211 ACAGCGCTTGATATTTGCTGGTAA 113234 Score = 89.7 bits (98), Expect = 3e-13 Identities = 108/147 (73%), Gaps = 0/147 (0%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||| ||||| || ||||| || || || ||||| |||||||| ||||| || | | Sbjct 113402 ATGCAAATTTTTGTCAAAACTCTAACTGGTAAAACTATCACTCTTGAAGTGGAAGCTTCA 113461 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 ||||| |||| | |||| ||||||| ||||||||||| | || |||||||| Sbjct 113462 GACACGATTGAGAACGTAAAGGCAAAAATTCAAGACAAAGAAGGAATCCCACCAGATCAG 113521 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAA 23757 ||| | || || ||||| || || ||| Sbjct 113522 CAGAGATTGATTTTTGCAGGTAATCAA 113548 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 337980116795756