Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyocaulus_20viviparus_20[genbank_20GCA_5F000816705.1_202015-03- 12] 7,157 sequences; 160,963,781 total letters Query= NC_030230.1 Length=372707 Score E Sequences producing significant alignments: (Bits) Value seq143 109 1e-18 seq5 105 2e-17 seq9 104 6e-17 seq271 100 7e-16 seq129 91.5 4e-13 >seq143 Length=269893 Score = 109 bits (120), Expect = 1e-18 Identities = 108/140 (77%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 225574 CCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTTTGC 225633 ||||| || |||||||||||||| || || |||||||||||||| || || ||||| Sbjct 137292 CCAGCAAAAATAAGTCGTTGTTGATCTGGAGGAATACCTTCCTTATCCTGAATCTTGGCT 137233 Query 225634 TTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGTCAAA 225693 |||||| ||||| ||||| || | ||| || ||||| ||||| |||||||| || | Sbjct 137232 TTCACATTCTCGATTGTGTCGGACGCTTCGACCTCTAAGGTGATTGTCTTGCCAGTGAGC 137173 Query 225694 GTTTTTATGAACACTTGCAT 225713 ||||| | ||| | ||||| Sbjct 137172 GTTTTCACGAAAATCTGCAT 137153 Score = 91.5 bits (100), Expect = 4e-13 Identities = 104/140 (74%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 225574 CCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTTTGC 225633 ||||||||||| || ||||| ||||| || || || ||||| || ||||| ||||| | Sbjct 138258 CCAGCGAAGATCAGGCGTTGCTGGTCCGGAGGGATTCCTTCTTTATCTTGTATCTTAGCC 138199 Query 225634 TTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGTCAAA 225693 || ||| ||| || ||||| || | ||||| |||| || || ||||| || |||| Sbjct 138198 TTTACATTTTCAATCGTGTCAGATGCCTCCACCTCTAGGGTTATTGTCTTTCCTGTCAGC 138139 Query 225694 GTTTTTATGAACACTTGCAT 225713 || |||| || | |||||| Sbjct 138138 GTCTTTACAAAAATTTGCAT 138119 Score = 87.8 bits (96), Expect = 4e-12 Identities = 104/141 (74%), Gaps = 0/141 (0%) Strand=Plus/Minus Query 225574 CCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTTTGC 225633 ||||| |||||||| || || || || || ||||| |||||||||||||||||||| | Sbjct 137941 CCAGCAAAGATAAGACGCTGCTGATCAGGAGGAATTCCTTCCTTGTCTTGGATCTTGGCC 137882 Query 225634 TTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGTCAAA 225693 || || |||||||| || || | || || || | ||||||||||| || || || Sbjct 137881 TTAACGTTCTCGATGGTATCAGATGCCTCAACCTCCAGTGTGATCGTCTTCCCTGTTAAT 137822 Query 225694 GTTTTTATGAACACTTGCATT 225714 || || | || | |||||| Sbjct 137821 GTCTTAACAAAAATCTGCATT 137801 >seq5 Length=965018 Score = 105 bits (116), Expect = 2e-17 Identities = 127/173 (73%), Gaps = 0/173 (0%) Strand=Plus/Minus Query 7543 GGTAATAGCCAACTTTACAACGTTATTATTACGGCGCATGCCTTTGTTATGATTTTCTTT 7602 |||||| | || | || || ||||||||| || ||||| ||| | || ||||| ||| Sbjct 793798 GGTAATGGTCAGTTGTATAATTCTATTATTACTGCTCATGCTTTTTTAATAATTTTTTTT 793739 Query 7603 TTTGTTATGCCGGTTATGATAGGCGGTTTCGGAAATTGATTCGTTCCTTTAATGATTGGT 7662 | || ||||| |||||| || || || || |||||||| | ||||| ||| | ||| Sbjct 793738 ATGGTGATGCCTACTATGATTGGGGGCTTTGGTAATTGATTATTACCTTTGATGTTAGGT 793679 Query 7663 GCTCCTGATATGGCTTTTCCAAGGCTTAACAATATAAGTTTTTGATTACTACC 7715 |||||||| |||||| | | || ||| ||||||||||||||||||| Sbjct 793678 AGACCTGATATAAGTTTTCCTCGTTTAAATAATTTAAGTTTTTGATTACTACC 793626 >seq9 Length=784367 Score = 104 bits (114), Expect = 6e-17 Identities = 107/140 (76%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 225574 CCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTTTGC 225633 || ||||| || |||| ||||||||| || || ||||||||||| ||||| || || | Sbjct 114612 CCCGCGAAAATTAGTCTTTGTTGGTCTGGTGGGATACCTTCCTTATCTTGTATTTTCGTC 114553 Query 225634 TTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGTCAAA 225693 |||||| ||| || |||||||||| || || || |||||||||||||| || || | Sbjct 114552 TTCACATTTTCAATAGTGTCTGAGGCCTCAACTTCCAACGTGATCGTCTTTCCTGTTAGC 114493 Query 225694 GTTTTTATGAACACTTGCAT 225713 || || | || | |||||| Sbjct 114492 GTCTTCACAAATATTTGCAT 114473 >seq271 Length=165737 Score = 100 bits (110), Expect = 7e-16 Identities = 106/140 (76%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 225574 CCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTTTGC 225633 || |||||||| | ||||||||||| || ||||| |||||||| |||||||||||| Sbjct 44782 CCGGCGAAGATCAACCGTTGTTGGTCTGGAGGAATGCCTTCCTTATCTTGGATCTTTGCT 44723 Query 225634 TTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGTCAAA 225693 || ||| || |||||||| |||| ||||| || | ||||| || || || || | | Sbjct 44722 TTAACATTCTCAATGGTGTCAGAGGCCTCCACTTCAAGAGTGATAGTTTTTCCAGTAAGA 44663 Query 225694 GTTTTTATGAACACTTGCAT 225713 || || | ||| | |||||| Sbjct 44662 GTCTTCACGAAAATTTGCAT 44643 >seq129 Length=285122 Score = 91.5 bits (100), Expect = 4e-13 Identities = 82/102 (80%), Gaps = 6/102 (6%) Strand=Plus/Plus Query 370672 TTCAGGATGACCAAAAAATCAGAATAAATGTTGATAAAGGATAGGATCGCCTCCGCCTGA 370731 ||||||||| ||||||||||| || ||||| ||||||| ||||||| || ||||| Sbjct 276842 TTCAGGATGTCCAAAAAATCAAAACAAATGCTGATAAACAATAGGAT---TACCACCTGA 276898 Query 370732 ---TGGATCAAAAAAGCTAGTATTAAAATTTCTATCAGTTAA 370770 ||||||||||| |||||||||||||| ||||||||| Sbjct 276899 ACTAGGATCAAAAAAAGAAGTATTAAAATTTCGATCAGTTAA 276940 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1192421846006958