Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyocaulus_20viviparus_20[genbank_20GCA_5F000816705.1_202015-03- 12] 7,157 sequences; 160,963,781 total letters Query= NC_031033.1 Length=217124 Score E Sequences producing significant alignments: (Bits) Value seq919 98.7 1e-15 >seq919 Length=24097 Score = 98.7 bits (108), Expect = 1e-15 Identities = 113/152 (74%), Gaps = 0/152 (0%) Strand=Plus/Minus Query 78759 GTTTCCTTGTGTAGATTAGATACAGCTATTCTTGCAGCTAGAATAGCATAATCAGGATGT 78818 |||| |||||||| ||| || ||||||||||| || || ||||| |||||||||||||| Sbjct 19342 GTTTTCTTGTGTAAATTCGAAACAGCTATTCTAGCTGCAAGAATGGCATAATCAGGATGC 19283 Query 78819 TGTGTAGTACAAGTGGCTGCTATTTCTGCCGCTAAAATATCTAACTCTATAGTTGTGACC 78878 ||||| || | || || |||| || || || |||| || || ||||| || Sbjct 19282 TGTGTGGTCATTGAAGCAGCGGTTTCAGCTGCCAAGTTATCCAATTCAGCAGTTGAAACT 19223 Query 78879 CCATTATATAGTCCTTGAATAACTTTCATGGC 78910 || |||||||| || ||||||||||| || Sbjct 19222 CCTTTATATAGACCGCCTATAACTTTCATTGC 19191 Score = 91.5 bits (100), Expect = 2e-13 Identities = 113/155 (73%), Gaps = 0/155 (0%) Strand=Plus/Minus Query 77106 AGGAGATGAGGATTAACTATTTGAAATTCTCCAGACAATACTCTACGAGTGTAAATATTA 77165 || || || || || || |||||||| || || || | ||||| | | || || || Sbjct 22285 AGCAGGTGTGGGTTTACAATTTGAAAATCACCCGAAAGCACTCTTCTGCTATATATGTTC 22226 Query 77166 CTGGTATATGGTTCCACAGATTCATTGTTTCCCAAAATTTGAGCAGTAGAAGCAGTTGGC 77225 || || ||||| || ||||| || || ||||||||||| || || |||||||||||| Sbjct 22225 GAAGTGTACGGTTCAACTGATTCGTTATTACCCAAAATTTGGGCTGTTGAAGCAGTTGGC 22166 Query 77226 ATAGGTGCCACCAATAAACTATTTCTGAGACCATG 77260 || || || ||||| ||||| || | | |||||| Sbjct 22165 ATTGGGGCAACCAACAAACTGTTACGAATACCATG 22131 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 694606653192480