Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyocaulus_20viviparus_20[genbank_20GCA_5F000816705.1_202015-03- 12] 7,157 sequences; 160,963,781 total letters Query= NC_031038.1 Length=222832 Score E Sequences producing significant alignments: (Bits) Value seq919 147 3e-30 >seq919 Length=24097 Score = 147 bits (162), Expect = 3e-30 Identities = 301/444 (68%), Gaps = 10/444 (2%) Strand=Plus/Minus Query 76692 ACTCCATAATATCAGAATGCCATGGTTCTAGATATATCGCCATAACACCCGGTCGTTTAT 76751 |||| | ||| || | ||||||||| |||| ||| || || | | || |||| ||| | Sbjct 20704 ACTCGAAAATGTCGGCATGCCATGGCTCTAAATAAATTGCAAATGCTCCTGGTCTTTTGT 20645 Query 76752 TACCTCCCTGATCTATATATCTGGCAGTGTTATTATAAACTCTCAACATTGGAATAATGC 76811 | || || ||||| | ||||| ||||| || || || || | || |||||||| | | Sbjct 20644 TTCCACCTTGATCAACATATCGAGCAGTATTGTTGTATACACGCAGCATTGGAACCAAAC 20585 Query 76812 CGTTAGATGTACCATTTGTTCCAGAAATATAACTTCCACATGCACGAATATTACTAATAG 76871 | || || |||||||| || || ||| | ||| || | ||| ||| | | Sbjct 20584 CATTGGAAGTACCATTAGTACCGCCAATCAACGAACCAGTAGCCCTAATCTTATGCACAT 20525 Query 76872 ATAGGCCTATTCCTCCTGCCATTTTAGAGATTAGAGCACAGCGTTTCAATGTGTCATAGA 76931 | ||| ||||| || || |||| ||||| | |||||| | || | || ||||| | Sbjct 20524 TCAAGCCGATTCCACCGGCACTTTTTGAGATCAAAGCACACTGCTTTAGCGTATCATATA 20465 Query 76932 TGCCCTCTATACTATCATCCATCAT-GTTAAGAAGAAAACAGCTAGACATTTGATGATGA 76990 | ||| | || ||| || |||| || || ||||| || ||| | ||| | | Sbjct 20464 TCCCCGCAATGGAATCTTCACTCATAGTCAACAAGAAG-CACGAAGAAAGTTGTGGCCAA 20406 Query 76991 ACAGTTCCTGCATTAAACAATGTAGGAGATGCATGAGTGAACCATTTTTCAGAAAGTAGA 77050 ||||||||||| |||| || || || ||||||||||| || |||| | ||| Sbjct 20405 TTTGTTCCTGCATTGAACAGCGTTGGTGACGCATGAGTGAAATATCGTTCACTCATCAGA 20346 Query 77051 TTGTATGTTTCAATAACTGCTTCTATATC----CCATTGATGAATTCCTACAGCGACACG 77106 ||||| |||||||| | || || ||||| |||| |||| |||| || ||||| Sbjct 20345 TTGTAGGTTTCAATTGCCGCGTCGATATCTTCACCATGGATG----CCTATTGCAACACG 20290 Query 77107 CATCAACATATGCTGAGGTCGTTC 77130 ||| | ||||||||| || ||||| Sbjct 20289 CATGAGCATATGCTGTGGCCGTTC 20266 Score = 111 bits (122), Expect = 2e-19 Identities = 117/154 (76%), Gaps = 0/154 (0%) Strand=Plus/Minus Query 77354 GTTTCCTTGTGTAGATTCGATACGGCTATTCTAGCAGCTAGAATTGCATAGTCAGGATGT 77413 |||| |||||||| |||||| || ||||||||||| || ||||| ||||| |||||||| Sbjct 19342 GTTTTCTTGTGTAAATTCGAAACAGCTATTCTAGCTGCAAGAATGGCATAATCAGGATGC 19283 Query 77414 TGTGTAGTGCAGGTGGCTGCTATTTCTGCCGCTAAAGTATCTAATTCTATAGTAGTAACT 77473 ||||| || | || || |||| || || || |||| ||||| ||| | |||| Sbjct 19282 TGTGTGGTCATTGAAGCAGCGGTTTCAGCTGCCAAGTTATCCAATTCAGCAGTTGAAACT 19223 Query 77474 CCGTTATATAGCCCTTGAATAACTTTCATGGCTA 77507 || |||||||| || ||||||||||| |||| Sbjct 19222 CCTTTATATAGACCGCCTATAACTTTCATTGCTA 19189 Score = 104 bits (114), Expect = 3e-17 Identities = 136/186 (73%), Gaps = 8/186 (4%) Strand=Plus/Minus Query 76498 TTCATATTGTGTATATAACCGTTCAAATTCATCTCCCCAAACATCATCCAAACCAGGACA 76557 |||| ||||||||| || ||||| | |||||||| |||||| | |||||||| Sbjct 20955 TTCACTTTGTGTATAAGTCC--TCAAACTTCTCTCCCCAGCAATCATCGAGTCCAGGACA 20898 Query 76558 TTCATTCGGACACATCAATGACCACTCACCATCTTCCTTAACCCGTTTCATAAAGAGATC 76617 ||||||||||||||| || |||||||| || | | |||||| ||||| || || || Sbjct 20897 TTCATTCGGACACATTAAGGACCACTCTAGGTCATGTTCAACCCGCTTCATGAAAAGGTC 20838 Query 76618 AGGTATCCATAGAGCAATAAATAGATCTCGGGTTCTACGTTCTTCATTT---CCTGTATT 76674 || | ||||| |||| ||| |||||||| | ||| ||||| | | || ||||| Sbjct 20837 TGGCACCCATAAAGCATAAAACAGATCTCGAG---CACGCTCTTCTTCTGGACCAGTATT 20781 Query 76675 CTTTTT 76680 ||| || Sbjct 20780 CTTCTT 20775 Score = 100 bits (110), Expect = 4e-16 Identities = 115/155 (74%), Gaps = 0/155 (0%) Strand=Plus/Minus Query 75701 AGGAGATGAGGATTAACAATTTGAAATTCTCCAGACAATACTCTTCGAGTGTAAATATTA 75760 || || || || || ||||||||||| || || || | ||||||| | || || || Sbjct 22285 AGCAGGTGTGGGTTTACAATTTGAAAATCACCCGAAAGCACTCTTCTGCTATATATGTTC 22226 Query 75761 CTGGTATATGGTTCCACAGATTCATTGTTTCCCAAAATTTGAGCAGTTGAAGCAGTCGGC 75820 || || ||||| || ||||| || || ||||||||||| || ||||||||||| ||| Sbjct 22225 GAAGTGTACGGTTCAACTGATTCGTTATTACCCAAAATTTGGGCTGTTGAAGCAGTTGGC 22166 Query 75821 ATAGGTGCCACCAATAAACTATTTCTGAGACCATG 75855 || || || ||||| ||||| || | | |||||| Sbjct 22165 ATTGGGGCAACCAACAAACTGTTACGAATACCATG 22131 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 712870619106240