Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyocaulus_20viviparus_20[genbank_20GCA_5F000816705.1_202015-03- 12] 7,157 sequences; 160,963,781 total letters Query= NC_032001.1 Length=327147 Score E Sequences producing significant alignments: (Bits) Value seq271 122 2e-22 seq143 114 3e-20 seq9 91.5 3e-13 >seq271 Length=165737 Score = 122 bits (134), Expect = 2e-22 Identities = 111/140 (79%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 282960 CCGGCAAAGATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCT 283019 ||||| |||||||| ||||||||||| ||||| || ||||| ||||||||||||||| Sbjct 44782 CCGGCGAAGATCAACCGTTGTTGGTCTGGAGGAATGCCTTCCTTATCTTGGATCTTTGCT 44723 Query 283020 TTTACGGTATCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTCAAA 283079 || || | || || ||||| || || || ||||| |||||||| || || || || | | Sbjct 44722 TTAACATTCTCAATGGTGTCAGAGGCCTCCACTTCAAGAGTGATAGTTTTTCCAGTAAGA 44663 Query 283080 GTCTTAACGAATATCTGCAT 283099 ||||| ||||| || ||||| Sbjct 44662 GTCTTCACGAAAATTTGCAT 44643 >seq143 Length=269893 Score = 114 bits (126), Expect = 3e-20 Identities = 110/141 (78%), Gaps = 0/141 (0%) Strand=Plus/Minus Query 282960 CCGGCAAAGATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCT 283019 || |||||||| | ||| || || ||| ||||| || ||||||||||||||||| || Sbjct 137941 CCAGCAAAGATAAGACGCTGCTGATCAGGAGGAATTCCTTCCTTGTCTTGGATCTTGGCC 137882 Query 283020 TTTACGGTATCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTCAAA 283079 || ||| | ||||| || || || || || || || || ||||||||||| || || || Sbjct 137881 TTAACGTTCTCGATGGTATCAGATGCCTCAACCTCCAGTGTGATCGTCTTCCCTGTTAAT 137822 Query 283080 GTCTTAACGAATATCTGCATT 283100 |||||||| || ||||||||| Sbjct 137821 GTCTTAACAAAAATCTGCATT 137801 Score = 105 bits (116), Expect = 1e-17 Identities = 109/143 (76%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 282957 TTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTT 283016 || || || || |||||||| || || || || || || ||||||||||| ||||| Sbjct 138581 TTACCAGCGAATATCAAACGCTGCTGATCTGGAGGGATCCCTTCCTTGTCTTGAATCTTA 138522 Query 283017 GCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTC 283076 ||||| || | || || |||||||| || |||||||| || || || ||||| || ||| Sbjct 138521 GCTTTCACATTCTCAATTGTGTCCGACGCCTCGACTTCAAGGGTTATTGTCTTCCCTGTC 138462 Query 283077 AAAGTCTTAACGAATATCTGCAT 283099 | |||||| ||||| || ||||| Sbjct 138461 AGAGTCTTCACGAAAATTTGCAT 138439 Score = 100 bits (110), Expect = 6e-16 Identities = 97/125 (78%), Gaps = 0/125 (0%) Strand=Plus/Minus Query 282975 CGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATA 283034 || ||||| ||| ||||| || || |||||||| ||||| ||||| || | || ||| Sbjct 137599 CGCTGTTGATCAGGAGGAATGCCTTCTTTGTCTTGAATCTTGGCTTTCACATTCTCAATA 137540 Query 283035 GTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATC 283094 || || || ||||||||||| || ||||| ||||| || || | |||||| || || ||| Sbjct 137539 GTATCAGACGCTTCGACTTCAAGCGTGATTGTCTTCCCTGTGAGAGTCTTCACAAAGATC 137480 Query 283095 TGCAT 283099 ||||| Sbjct 137479 TGCAT 137475 >seq9 Length=784367 Score = 91.5 bits (100), Expect = 3e-13 Identities = 106/143 (74%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 282957 TTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTT 283016 || || ||||| ||||| || ||||| || ||||| || || || ||||| || ||| Sbjct 113234 TTACCAGCAAATATCAAGCGCTGTTGATCCGGTGGAATTCCTTCTTTATCTTGAATTTTT 113175 Query 283017 GCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTC 283076 ||||| || | || || ||||| || ||||| || || || || |||||||| || || Sbjct 113174 GCTTTCACATTCTCAATTGTGTCGGAGGCTTCAACCTCTAGTGTAATCGTCTTCCCGGTA 113115 Query 283077 AAAGTCTTAACGAATATCTGCAT 283099 | || || || ||||||||||| Sbjct 113114 AGTGTTTTCACAAATATCTGCAT 113092 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1046643214996678