Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyocaulus_20viviparus_20[genbank_20GCA_5F000816705.1_202015-03- 12] 7,157 sequences; 160,963,781 total letters Query= NC_033775.1 Length=376207 Score E Sequences producing significant alignments: (Bits) Value seq271 125 2e-23 seq143 116 9e-21 seq9 114 3e-20 >seq271 Length=165737 Score = 125 bits (138), Expect = 2e-23 Identities = 110/137 (80%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 |||||||||||||| ||||| || |||||||| ||||| || || ||||| ||| ||| Sbjct 44646 CAAATTTTCGTGAAGACTCTTACTGGAAAAACTATCACTCTTGAAGTGGAGGCCTCTGAC 44705 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 ||||| ||||| || ||| |||||| || || || ||||| || ||||| ||||| ||| Sbjct 44706 ACCATTGAGAATGTTAAAGCAAAGATCCAAGATAAGGAAGGCATTCCTCCAGACCAACAA 44765 Query 178044 CGACTTATCTTCGCCGG 178060 || | ||||||||||| Sbjct 44766 CGGTTGATCTTCGCCGG 44782 >seq143 Length=269893 Score = 116 bits (128), Expect = 9e-21 Identities = 108/137 (79%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || |||||||||||||| ||||| || || || |||||| | ||||| ||| || ||| Sbjct 137156 CAGATTTTCGTGAAAACGCTCACTGGCAAGACAATCACCTTAGAGGTCGAAGCGTCCGAC 137215 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || |||||||| || ||| ||||||||||| || ||||| || ||||| || || ||| Sbjct 137216 ACAATCGAGAATGTGAAAGCCAAGATTCAGGATAAGGAAGGTATTCCTCCAGATCAACAA 137275 Query 178044 CGACTTATCTTCGCCGG 178060 |||||||| || || || Sbjct 137276 CGACTTATTTTTGCTGG 137292 Score = 116 bits (128), Expect = 9e-21 Identities = 108/137 (79%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 |||||||| || || || || |||||||| || || ||||| |||||||| || ||| Sbjct 138122 CAAATTTTTGTAAAGACGCTGACAGGAAAGACAATAACCCTAGAGGTGGAGGCATCTGAC 138181 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || || || || || || ||||| || || ||||||||||||||||||||||||||| Sbjct 138182 ACGATTGAAAATGTAAAGGCTAAGATACAAGATAAAGAAGGAATCCCTCCGGACCAGCAA 138241 Query 178044 CGACTTATCTTCGCCGG 178060 || || |||||||| || Sbjct 138242 CGCCTGATCTTCGCTGG 138258 Score = 104 bits (114), Expect = 6e-17 Identities = 107/140 (76%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 |||||||||||||| ||||| ||||| || || || ||||| || || || || ||| Sbjct 138442 CAAATTTTCGTGAAGACTCTGACAGGGAAGACAATAACCCTTGAAGTCGAGGCGTCGGAC 138501 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || || ||||| || ||| |||||||| ||||| ||||| |||||||| || ||||| Sbjct 138502 ACAATTGAGAATGTGAAAGCTAAGATTCAAGACAAGGAAGGGATCCCTCCAGATCAGCAG 138561 Query 178044 CGACTTATCTTCGCCGGAAA 178063 || | || ||||| || || Sbjct 138562 CGTTTGATATTCGCTGGTAA 138581 Score = 98.7 bits (108), Expect = 2e-15 Identities = 104/137 (76%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || || ||||| ||||||||||| || || ||||| || || || ||| || || Sbjct 137478 CAGATCTTTGTGAAGACTCTCACAGGGAAGACAATCACGCTTGAAGTCGAAGCGTCTGAT 137537 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || || ||||| || ||| |||||||| ||||||||||| || ||||| || || || Sbjct 137538 ACTATTGAGAATGTGAAAGCCAAGATTCAAGACAAAGAAGGCATTCCTCCTGATCAACAG 137597 Query 178044 CGACTTATCTTCGCCGG 178060 ||||| || ||||| || Sbjct 137598 CGACTCATTTTCGCAGG 137614 Score = 98.7 bits (108), Expect = 2e-15 Identities = 104/137 (76%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || ||||| || || || | ||||| || |||||||| || ||||| || || || Sbjct 137805 CAGATTTTTGTTAAGACATTAACAGGGAAGACGATCACACTGGAGGTTGAGGCATCTGAT 137864 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 |||||||||||||| || ||||| || ||||| |||||||| ||||| || ||||| Sbjct 137865 ACCATCGAGAACGTTAAGGCCAAGATCCAAGACAAGGAAGGAATTCCTCCTGATCAGCAG 137924 Query 178044 CGACTTATCTTCGCCGG 178060 || |||||||| || || Sbjct 137925 CGTCTTATCTTTGCTGG 137941 >seq9 Length=784367 Score = 114 bits (126), Expect = 3e-20 Identities = 111/143 (78%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 |||||||| || |||||||| || || ||||| ||||| || || |||||| |||||| Sbjct 113405 CAAATTTTTGTCAAAACTCTAACTGGTAAAACTATCACTCTTGAAGTGGAAGCTTCAGAC 113464 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || || |||||||| || ||| ||||| ||||||||||||||||| || || ||||| Sbjct 113465 ACGATTGAGAACGTAAAGGCAAAAATTCAAGACAAAGAAGGAATCCCACCAGATCAGCAG 113524 Query 178044 CGACTTATCTTCGCCGGAAAACA 178066 || | || || || || || || Sbjct 113525 AGATTGATTTTTGCAGGTAATCA 113547 Score = 98.7 bits (108), Expect = 2e-15 Identities = 104/137 (76%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || ||||| || ||||| | || || ||||| ||||| || || |||||| |||||| Sbjct 113701 CAGATTTTTGTCAAAACCTTGACTGGTAAAACTATCACTCTTGAAGTGGAAGCTTCAGAC 113760 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || || ||||| || ||| ||| ||||| ||||||||||||||||| || || || || Sbjct 113761 ACAATTGAGAATGTGAAAGCAAAAATTCAAGACAAAGAAGGAATCCCACCAGATCAACAG 113820 Query 178044 CGACTTATCTTCGCCGG 178060 || || || || || || Sbjct 113821 CGGCTAATTTTTGCTGG 113837 Score = 91.5 bits (100), Expect = 4e-13 Identities = 104/140 (74%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || || |||||||| || || || || ||||| || || ||||| ||| ||| ||| Sbjct 113095 CAGATATTTGTGAAAACACTTACCGGGAAGACGATTACACTAGAGGTTGAAGCCTCCGAC 113154 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || || ||||| || ||| ||| ||||| || ||||||||||| || ||||| || || Sbjct 113155 ACAATTGAGAATGTGAAAGCAAAAATTCAAGATAAAGAAGGAATTCCACCGGATCAACAG 113214 Query 178044 CGACTTATCTTCGCCGGAAA 178063 || | || || || || || Sbjct 113215 CGCTTGATATTTGCTGGTAA 113234 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1203620818977458