Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dirofilaria_20immitis_20[genbank_20GCA_5F001077395.1_202013-08-23] 25,560 sequences; 84,888,114 total letters Query= NC_001669.1 Length=5243 Score E Sequences producing significant alignments: (Bits) Value seq10198 239 1e-59 >seq10198 Length=2496 Score = 239 bits (264), Expect = 1e-59 Identities = 135/137 (99%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 2532 GGGATCCAGACATGATAAGATACATTGATGAGTTTGGACAAACCACAACTAGAATGCAGT 2591 || || |||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1079 GGTATACAGACATGATAAGATACATTGATGAGTTTGGACAAACCACAACTAGAATGCAGT 1138 Query 2592 GaaaaaaaTGCTTTATTTGTGAAATTTGTGATGCTATTGCTTTATTTGTAACCATTATAA 2651 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1139 GAAAAAAATGCTTTATTTGTGAAATTTGTGATGCTATTGCTTTATTTGTAACCATTATAA 1198 Query 2652 GCTGCAATAAACAAGTT 2668 ||||||||||||||||| Sbjct 1199 GCTGCAATAAACAAGTT 1215 Score = 174 bits (192), Expect = 5e-40 Identities = 137/178 (77%), Gaps = 0/178 (0%) Strand=Plus/Plus Query 1 GCCTCGGCCTCTGCATAAATaaaaaaaaTTAGTCAGCCATGGGGCGGAGAATGGGCGGAA 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 2319 GCCTCGGCCTCTGCATAAATAAAAAAAATTAGTCAGCCATGGGGCGGAGAATGGGCGGAA 2378 Query 61 CTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCTATGGTTGCTGACTAA 120 || ||||||||||||||||| Sbjct 2379 CTGGGCGGAGTTAGGGGCGGGATGGGCGGAGTTAGGGGCGGGACTATGGTTGCTGACTAA 2438 Query 121 TTGAGATGCATGCTTTGCATACTTCTGCCTGCTGGGGAGCCTGGGGACTTTCCACACC 178 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 2439 TTGAGATGCATGCTTTGCATACTTCTGCCTGCTGGGGAGCCTGGGGACTTTCCACACC 2496 Score = 125 bits (138), Expect = 2e-25 Identities = 71/72 (99%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 5172 AGCTTTTTGCAAAAGCCTAGGCCTCCAAAAAAGCCTCCTCACTACTTCTGGAATAGCTCA 5231 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 2247 AGCTTTTTGCAAAAGCCTAGGCCTCCAAAAAAGCCTCCTCACTACTTCTGGAATAGCTCA 2306 Query 5232 GAGGCCGAGGCG 5243 ||||| |||||| Sbjct 2307 GAGGCAGAGGCG 2318 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 16660940923200