Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Dirofilaria_20immitis_20[genbank_20GCA_5F001077395.1_202013-08-23]
25,560 sequences; 84,888,114 total letters
Query= NC_001993.1
Length=236120
Score E
Sequences producing significant alignments: (Bits) Value
seq3028 122 1e-22
seq10840 109 8e-19
>seq3028
Length=62347
Score = 122 bits (134), Expect = 1e-22
Identities = 169/233 (73%), Gaps = 3/233 (1%)
Strand=Plus/Minus
Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598
|||||||| || | || || | || || ||||| ||||| | || | ||||||
Sbjct 28316 ATGCAAATTTTCGTGAAAACTTTGACGGGTAAAACCATAACGTTGGAAGTGGAAGCATCG 28257
Query 124599 GATACAATTTCTAAT-TTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCA 124657
||||| || ||| ||||| || ||||| ||||| || || ||||| ||||| || ||
Sbjct 28256 GATACGATCGAGAATGTTAAAGCA-AAAATCCAAGACAAGGAGGGTATTCCACCAGACCA 28198
Query 124658 ACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAA 124717
||| | || || ||||| || || ||| | |||||| |||| || ||| ||||||||
Sbjct 28197 ACAGCGACTGATCTTTGCCGGGAAGCAACTGGAGGATGGTCGTACGTTATCGGATTATAA 28138
Query 124718 TATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGG-TATT 124769
|||||| || ||||| || | || |||||| | ||| | || ||||| ||||
Sbjct 28137 TATTCAGAAGGAATCGACGCTTCACTTGGTTCTTCGTCTTCGTGGTGGCTATT 28085
Score = 100 bits (110), Expect = 4e-16
Identities = 106/140 (76%), Gaps = 0/140 (0%)
Strand=Plus/Minus
Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598
|||||||| ||| | || ||| | || |||||||| || || ||||| ||||||| |
Sbjct 28969 ATGCAAATTTTTGTGAAAACATTGACGGGCAAAACAATCACCTTAGAGGTTGAAGCCTCT 28910
Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658
|||||||| ||| | ||| ||||||||||| || ||||| || ||||| |||||
Sbjct 28909 GATACAATCGAAAATGTGAAAGCCAAAATTCAAGACAAGGAAGGAATCCCACCAGATCAG 28850
Query 124659 CAAAGGCTTATTTTTGCAGG 124678
||| | |||||||| || ||
Sbjct 28849 CAACGTCTTATTTTCGCTGG 28830
Score = 86.0 bits (94), Expect = 9e-12
Identities = 103/140 (74%), Gaps = 0/140 (0%)
Strand=Plus/Minus
Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598
||||| || || | |||||||| || |||||||| ||||| | || | |||||
Sbjct 28659 ATGCAGATTTTCGTCAAGACACTTACTGGCAAAACCATAACACTGGAAGTAGAAGCCTCA 28600
Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658
||||| || ||| |||| ||||||||||| || || || || || ||||||||
Sbjct 28599 GATACTATCGAGAATGTAAAGGCCAAAATTCAAGACAAGGAGGGCATCCCTCCTGATCAG 28540
Query 124659 CAAAGGCTTATTTTTGCAGG 124678
||| | ||||||||||||||
Sbjct 28539 CAACGCCTTATTTTTGCAGG 28520
>seq10840
Length=643
Score = 109 bits (120), Expect = 8e-19
Identities = 110/143 (77%), Gaps = 0/143 (0%)
Strand=Plus/Plus
Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598
||||||||||| | || |||||||| || ||||| || ||| | ||| | ||| | |
Sbjct 1 ATGCAAATATTCGTGAAAACACTAACTGGTAAAACGATTACTCTTGAGGTAGAATCGTCT 60
Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658
||||| ||| ||| | ||| |||||||||||||| || || || ||||||||||||
Sbjct 61 GATACCATTGAGAATGTGAAAGCTAAAATTCAAGATAAGGAGGGCATTCCACCTGATCAA 120
Query 124659 CAAAGGCTTATTTTTGCAGGAAA 124681
||| | |||||||| ||||| ||
Sbjct 121 CAACGACTTATTTTCGCAGGTAA 143
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 755214631808000
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |