Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dirofilaria_20immitis_20[genbank_20GCA_5F001077395.1_202013-08-23] 25,560 sequences; 84,888,114 total letters Query= NC_001993.1 Length=236120 Score E Sequences producing significant alignments: (Bits) Value seq3028 122 1e-22 seq10840 109 8e-19 >seq3028 Length=62347 Score = 122 bits (134), Expect = 1e-22 Identities = 169/233 (73%), Gaps = 3/233 (1%) Strand=Plus/Minus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 |||||||| || | || || | || || ||||| ||||| | || | |||||| Sbjct 28316 ATGCAAATTTTCGTGAAAACTTTGACGGGTAAAACCATAACGTTGGAAGTGGAAGCATCG 28257 Query 124599 GATACAATTTCTAAT-TTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCA 124657 ||||| || ||| ||||| || ||||| ||||| || || ||||| ||||| || || Sbjct 28256 GATACGATCGAGAATGTTAAAGCA-AAAATCCAAGACAAGGAGGGTATTCCACCAGACCA 28198 Query 124658 ACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAA 124717 ||| | || || ||||| || || ||| | |||||| |||| || ||| |||||||| Sbjct 28197 ACAGCGACTGATCTTTGCCGGGAAGCAACTGGAGGATGGTCGTACGTTATCGGATTATAA 28138 Query 124718 TATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGG-TATT 124769 |||||| || ||||| || | || |||||| | ||| | || ||||| |||| Sbjct 28137 TATTCAGAAGGAATCGACGCTTCACTTGGTTCTTCGTCTTCGTGGTGGCTATT 28085 Score = 100 bits (110), Expect = 4e-16 Identities = 106/140 (76%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 |||||||| ||| | || ||| | || |||||||| || || ||||| ||||||| | Sbjct 28969 ATGCAAATTTTTGTGAAAACATTGACGGGCAAAACAATCACCTTAGAGGTTGAAGCCTCT 28910 Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658 |||||||| ||| | ||| ||||||||||| || ||||| || ||||| ||||| Sbjct 28909 GATACAATCGAAAATGTGAAAGCCAAAATTCAAGACAAGGAAGGAATCCCACCAGATCAG 28850 Query 124659 CAAAGGCTTATTTTTGCAGG 124678 ||| | |||||||| || || Sbjct 28849 CAACGTCTTATTTTCGCTGG 28830 Score = 86.0 bits (94), Expect = 9e-12 Identities = 103/140 (74%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 ||||| || || | |||||||| || |||||||| ||||| | || | ||||| Sbjct 28659 ATGCAGATTTTCGTCAAGACACTTACTGGCAAAACCATAACACTGGAAGTAGAAGCCTCA 28600 Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658 ||||| || ||| |||| ||||||||||| || || || || || |||||||| Sbjct 28599 GATACTATCGAGAATGTAAAGGCCAAAATTCAAGACAAGGAGGGCATCCCTCCTGATCAG 28540 Query 124659 CAAAGGCTTATTTTTGCAGG 124678 ||| | |||||||||||||| Sbjct 28539 CAACGCCTTATTTTTGCAGG 28520 >seq10840 Length=643 Score = 109 bits (120), Expect = 8e-19 Identities = 110/143 (77%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 ||||||||||| | || |||||||| || ||||| || ||| | ||| | ||| | | Sbjct 1 ATGCAAATATTCGTGAAAACACTAACTGGTAAAACGATTACTCTTGAGGTAGAATCGTCT 60 Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658 ||||| ||| ||| | ||| |||||||||||||| || || || |||||||||||| Sbjct 61 GATACCATTGAGAATGTGAAAGCTAAAATTCAAGATAAGGAGGGCATTCCACCTGATCAA 120 Query 124659 CAAAGGCTTATTTTTGCAGGAAA 124681 ||| | |||||||| ||||| || Sbjct 121 CAACGACTTATTTTCGCAGGTAA 143 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 755214631808000