Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dirofilaria_20immitis_20[genbank_20GCA_5F001077395.1_202013-08-23] 25,560 sequences; 84,888,114 total letters Query= NC_002331.1 Length=178733 Score E Sequences producing significant alignments: (Bits) Value seq4479 98.7 1e-15 seq1083 96.9 4e-15 >seq4479 Length=2672 Score = 98.7 bits (108), Expect = 1e-15 Identities = 77/90 (86%), Gaps = 3/90 (3%) Strand=Plus/Plus Query 60055 TGAAAAATTTT--CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGAC 60112 || |||| ||| |||| |||| ||||||||||||| |||||| | ||||||||||| Sbjct 2342 TGTAAAAGTTTGCCTCCCCGGCCGGGAATCGAACCCGGGTCTCGCACGTGACAGGCGCGG 2401 Query 60113 ATACTCACCACTATACTACCGAGGA-TTGA 60141 ||||||||||||||||||||||||| |||| Sbjct 2402 ATACTCACCACTATACTACCGAGGACTTGA 2431 Score = 95.1 bits (104), Expect = 1e-14 Identities = 72/84 (86%), Gaps = 2/84 (2%) Strand=Plus/Minus Query 60056 GAAAA--ATTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACA 60113 ||||| ||| |||| |||| ||||||||||||| |||||| | ||||||||||| | Sbjct 1305 GAAAAGCATTGCCTCCCCGGCCGGGAATCGAACCCGGGTCTCGCACGTGACAGGCGCGGA 1246 Query 60114 TACTCACCACTATACTACCGAGGA 60137 |||||||||||||||||||||||| Sbjct 1245 TACTCACCACTATACTACCGAGGA 1222 >seq1083 Length=22644 Score = 96.9 bits (106), Expect = 4e-15 Identities = 67/76 (88%), Gaps = 0/76 (0%) Strand=Plus/Minus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 |||| |||| ||||||||||||| |||||| | ||||||||||| ||||||||||||| Sbjct 2258 CTCCCCGGCCGGGAATCGAACCCGGGTCTCGCACGTGACAGGCGCGGATACTCACCACTA 2199 Query 60126 TACTACCGAGGATTGA 60141 |||||||||||| ||| Sbjct 2198 TACTACCGAGGACTGA 2183 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 571634904276800