Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dirofilaria_20immitis_20[genbank_20GCA_5F001077395.1_202013-08-23] 25,560 sequences; 84,888,114 total letters Query= NC_003529.1 Length=155060 Score E Sequences producing significant alignments: (Bits) Value seq1448 86.0 6e-12 seq3028 84.2 2e-11 >seq1448 Length=39285 Score = 86.0 bits (94), Expect = 6e-12 Identities = 107/144 (74%), Gaps = 2/144 (1%) Strand=Plus/Minus Query 139623 TACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTTT 139682 |||| ||| | |||| ||||||||||| |||||||||||||| || || ||| | || Sbjct 34874 TACCTGCAAAAATCAATCGTTGCTGATCTGGAGGTATGCCTTCCTTATC-CTGAATCTTC 34816 Query 139683 G-TTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGTC 139741 | ||||| | ||| | || || | || || || |||| || | |||||| || || Sbjct 34815 GCTTTTACATTTTCAATAGTATCCGAGGATTCGACTTCAAGCGTAATCGTCTTACCAGTT 34756 Query 139742 AACGTTTTTACGAATATTTGCATA 139765 || |||||||| || ||||||||| Sbjct 34755 AATGTTTTTACAAAAATTTGCATA 34732 >seq3028 Length=62347 Score = 84.2 bits (92), Expect = 2e-11 Identities = 106/143 (74%), Gaps = 2/143 (1%) Strand=Plus/Plus Query 139623 TACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTTT 139682 ||||||| | || |||||||||||||| || || || ||||| ||||| ||| |||| Sbjct 28828 TACCAGCGAAAATAAGACGTTGCTGATCTGGTGGGATTCCTTCCTTGTC-TTGAATTTTG 28886 Query 139683 G-TTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGTC 139741 | ||| | | ||| | ||| || | || || ||||| | ||| | || ||||| ||| Sbjct 28887 GCTTTCACATTTTCGATTGTATCAGAGGCTTCAACCTCTAAGGTGATTGTTTTGCCCGTC 28946 Query 139742 AACGTTTTTACGAATATTTGCAT 139764 || ||||| || || |||||||| Sbjct 28947 AATGTTTTCACAAAAATTTGCAT 28969 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 495905507552000