Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dirofilaria_20immitis_20[genbank_20GCA_5F001077395.1_202013-08-23] 25,560 sequences; 84,888,114 total letters Query= NC_004117.1 Length=158482 Score E Sequences producing significant alignments: (Bits) Value seq1448 105 7e-18 seq3028 84.2 2e-11 >seq1448 Length=39285 Score = 105 bits (116), Expect = 7e-18 Identities = 109/143 (76%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 143043 TACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTAATTTTTT 143102 |||| ||| | |||| ||||||||||| |||||||||||||| || || ||| || Sbjct 34874 TACCTGCAAAAATCAATCGTTGCTGATCTGGAGGTATGCCTTCCTTATCCTGAATCTTCG 34815 Query 143103 GTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCACCGTCTTGCCGGTCA 143162 ||||| | ||| | || |||| || ||| ||||||| || | |||||| || || | Sbjct 34814 CTTTTACATTTTCAATAGTATCCGAGGATTCGACTTCAAGCGTAATCGTCTTACCAGTTA 34755 Query 143163 ATGTTTTTACGAATATTTGCATA 143185 |||||||||| || ||||||||| Sbjct 34754 ATGTTTTTACAAAAATTTGCATA 34732 >seq3028 Length=62347 Score = 84.2 bits (92), Expect = 2e-11 Identities = 107/144 (74%), Gaps = 4/144 (3%) Strand=Plus/Plus Query 143043 TACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCG-GTAATTTTT 143101 |||||||| | ||||| || || ||||| || || || ||||| ||||| ||| | || Sbjct 29603 TACCAGCAAAAATCAGGCGCTGTTGATCCGGTGGAATACCTTCCTTGTCTTGTA--TCTT 29660 Query 143102 TGTTTTAGCTGT-TCCACCGTGTCCGTGGGTTCTACTTCAACAGTCACCGTCTTGCCGGT 143160 || |||| | | || | |||||| | | ||| ||||| | || | || || || || Sbjct 29661 TGCTTTAACATTCTCAATCGTGTCTGAAGCTTCCACTTCTAGCGTAATTGTTTTTCCCGT 29720 Query 143161 CAATGTTTTTACGAATATTTGCAT 143184 ||||||||||||||| |||||||| Sbjct 29721 CAATGTTTTTACGAAGATTTGCAT 29744 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 506852408899200