Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Dirofilaria_20immitis_20[genbank_20GCA_5F001077395.1_202013-08-23]
25,560 sequences; 84,888,114 total letters
Query= NC_004690.1
Length=113220
Score E
Sequences producing significant alignments: (Bits) Value
seq3028 91.5 1e-13
>seq3028
Length=62347
Score = 91.5 bits (100), Expect = 1e-13
Identities = 104/140 (74%), Gaps = 0/140 (0%)
Strand=Plus/Plus
Query 15224 CCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAAATTTTGCTC 15283
|||||| | || | |||||| || || ||| |||||||| ||||| |||||||
Sbjct 28830 CCAGCGAAAATAAGACGTTGCTGATCTGGTGGGATTCCTTCCTTGTCTTGAATTTTGGCT 28889
Query 15284 TTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTACCTGTCAGA 15343
|| ||| |||| || ||||| ||| || |||||||| || ||||| || ||||
Sbjct 28890 TTCACATTTTCGATTGTATCAGAGGCTTCAACCTCTAAGGTGATTGTTTTGCCCGTCAAT 28949
Query 15344 GTTTTTACAAAAATTTGCAT 15363
||||| ||||||||||||||
Sbjct 28950 GTTTTCACAAAAATTTGCAT 28969
Score = 87.8 bits (96), Expect = 1e-12
Identities = 108/145 (74%), Gaps = 2/145 (1%)
Strand=Plus/Plus
Query 15221 TTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAAATTTT- 15279
|| |||||| | ||||| ||||| || || |||||| ||||||||||| |||||
Sbjct 29227 TTACCAGCGAAAATCAACCGTTGCTGATCTGGTGGAATGCCTTCTTTGTCCTGGATTTTC 29286
Query 15280 GCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTACCTGT 15339
||| || ||| | || ||||| || ||| || || || || || || ||||| ||
Sbjct 29287 GCT-TTAACATTCTCGATGGTGTCAGATGCTTCCACTTCCAATGTGATTGTCTTACCGGT 29345
Query 15340 CAGAGTTTTTACAAAAATTTGCATA 15364
|||||||| |||||||||||||||
Sbjct 29346 AAGAGTTTTCACAAAAATTTGCATA 29370
Score = 84.2 bits (92), Expect = 2e-11
Identities = 149/212 (70%), Gaps = 4/212 (2%)
Strand=Plus/Plus
Query 15154 AACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTC 15213
||| || ||||| || || || || || || || ||||| || | | | || ||
Sbjct 28107 AACCAAGTGAAGCGTCGATTCCTTCTGAATATTATAATCCGATAACGTACGACCATCCTC 28166
Query 15214 TAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACA 15273
| ||| || || || | |||| || |||||||| |||||| || || |||||
Sbjct 28167 CAGTTGCTTCCCGGCAAAGATCAGTCGCTGTTGGTCTGGTGGAATACCCTCCTTGTCTTG 28226
Query 15274 AATTTT-GCTCTTTACAATTTCTATGGTATCGCTATT-TTCTACATCTAAGGTAATGGTT 15331
||||| ||| || ||| | || || ||||| | || ||| || || || || ||||||
Sbjct 28227 GATTTTTGCT-TTAACATTCTCGATCGTATC-CGATGCTTCCACTTCCAACGTTATGGTT 28284
Query 15332 TTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15363
||||| |||| |||||| || |||||||||||
Sbjct 28285 TTACCCGTCAAAGTTTTCACGAAAATTTGCAT 28316
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 362066376651960
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |