Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dirofilaria_20immitis_20[genbank_20GCA_5F001077395.1_202013-08-23] 25,560 sequences; 84,888,114 total letters Query= NC_004690.1 Length=113220 Score E Sequences producing significant alignments: (Bits) Value seq3028 91.5 1e-13 >seq3028 Length=62347 Score = 91.5 bits (100), Expect = 1e-13 Identities = 104/140 (74%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 15224 CCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAAATTTTGCTC 15283 |||||| | || | |||||| || || ||| |||||||| ||||| ||||||| Sbjct 28830 CCAGCGAAAATAAGACGTTGCTGATCTGGTGGGATTCCTTCCTTGTCTTGAATTTTGGCT 28889 Query 15284 TTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTACCTGTCAGA 15343 || ||| |||| || ||||| ||| || |||||||| || ||||| || |||| Sbjct 28890 TTCACATTTTCGATTGTATCAGAGGCTTCAACCTCTAAGGTGATTGTTTTGCCCGTCAAT 28949 Query 15344 GTTTTTACAAAAATTTGCAT 15363 ||||| |||||||||||||| Sbjct 28950 GTTTTCACAAAAATTTGCAT 28969 Score = 87.8 bits (96), Expect = 1e-12 Identities = 108/145 (74%), Gaps = 2/145 (1%) Strand=Plus/Plus Query 15221 TTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAAATTTT- 15279 || |||||| | ||||| ||||| || || |||||| ||||||||||| ||||| Sbjct 29227 TTACCAGCGAAAATCAACCGTTGCTGATCTGGTGGAATGCCTTCTTTGTCCTGGATTTTC 29286 Query 15280 GCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTACCTGT 15339 ||| || ||| | || ||||| || ||| || || || || || || ||||| || Sbjct 29287 GCT-TTAACATTCTCGATGGTGTCAGATGCTTCCACTTCCAATGTGATTGTCTTACCGGT 29345 Query 15340 CAGAGTTTTTACAAAAATTTGCATA 15364 |||||||| ||||||||||||||| Sbjct 29346 AAGAGTTTTCACAAAAATTTGCATA 29370 Score = 84.2 bits (92), Expect = 2e-11 Identities = 149/212 (70%), Gaps = 4/212 (2%) Strand=Plus/Plus Query 15154 AACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTC 15213 ||| || ||||| || || || || || || || ||||| || | | | || || Sbjct 28107 AACCAAGTGAAGCGTCGATTCCTTCTGAATATTATAATCCGATAACGTACGACCATCCTC 28166 Query 15214 TAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACA 15273 | ||| || || || | |||| || |||||||| |||||| || || ||||| Sbjct 28167 CAGTTGCTTCCCGGCAAAGATCAGTCGCTGTTGGTCTGGTGGAATACCCTCCTTGTCTTG 28226 Query 15274 AATTTT-GCTCTTTACAATTTCTATGGTATCGCTATT-TTCTACATCTAAGGTAATGGTT 15331 ||||| ||| || ||| | || || ||||| | || ||| || || || || |||||| Sbjct 28227 GATTTTTGCT-TTAACATTCTCGATCGTATC-CGATGCTTCCACTTCCAACGTTATGGTT 28284 Query 15332 TTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15363 ||||| |||| |||||| || ||||||||||| Sbjct 28285 TTACCCGTCAAAGTTTTCACGAAAATTTGCAT 28316 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 362066376651960