Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dirofilaria_20immitis_20[genbank_20GCA_5F001077395.1_202013-08-23] 25,560 sequences; 84,888,114 total letters Query= NC_004813.1 Length=57930 Score E Sequences producing significant alignments: (Bits) Value seq25371 345 2e-90 seq24227 241 5e-59 seq22751 235 2e-57 seq24591 111 6e-20 >seq25371 Length=205 Score = 345 bits (382), Expect = 2e-90 Identities = 197/201 (98%), Gaps = 0/201 (0%) Strand=Plus/Plus Query 12868 GCTTTCCGGGAAAACGGGATCACCTCGATGGAACAGGTTAACGCAGGAATGCGCGTAGCC 12927 ||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||| Sbjct 5 GCTTTTCGGGAAAACGGGATCACCACGATGGAACAGGTTAACGCAGGAATGCGCGTAGCC 64 Query 12928 CGTCGGCAGAATCGACCATTTCTTCCATCACCCGGGCAGTTTGTTGCATGGTGCCGGGAA 12987 ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| Sbjct 65 CGTCGGCAGAATCGACCATTTCTGCCATCACCCGGGCAGTTTGTTGCATGGTGCCGGGAA 124 Query 12988 GAAGCATCCGTTATCGCCGGACTGCCAAACGTCAGCGAGCTGGTTGATATGGTTTACGAG 13047 ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 125 GAAGCATCCGTTACCGCCGGACTGCCAAACGTCAGCGAGCTGGTTGATATGGTTTACGAG 184 Query 13048 TATTGCCGGAAGCGAGGCCTG 13068 ||||||||||||||||||||| Sbjct 185 TATTGCCGGAAGCGAGGCCTG 205 >seq24227 Length=246 Score = 241 bits (266), Expect = 5e-59 Identities = 203/247 (82%), Gaps = 2/247 (1%) Strand=Plus/Minus Query 44542 CTGCGACCAGACGGTCCCGGATGGTTTCGGGGGCACAGAGCCGCGGATGACCTTTAATGC 44601 |||||||||| | || ||||| || || || ||||| |||||||| || |||| |||||| Sbjct 246 CTGCGACCAGTCAGTGCCGGACGGCTTTGGCGGCACGGAGCCGCGCATCACCTGTAATGC 187 Query 44602 GTACCTGTCACAACAGCGTAAGGCGTGGGACGTTCTCAGTGATTTCTGCTCGGCGATGCG 44661 ||||||| | |||||||||||||||||| || ||||| |||||||||||||||||||| Sbjct 186 GTACCTGACCACACAGCGTAAGGCGTGGGATGTGCTCAGCGATTTCTGCTCGGCGATGCG 127 Query 44662 CTGTATGCCGGTATGGAACGGGCAGACGCTGACGTTTGTGCAGGACCGTCCGTCAGATGT 44721 |||||||||||||||||||||||||||||||||||| ||||||||||| ||||| ||| Sbjct 126 CTGTATGCCGGTATGGAACGGGCAGACGCTGACGTTCGTGCAGGACCGACCGTCGGATAA 67 Query 44722 GGTGTGGCCCTACACAAACAGTGATGTGGTGGCTGAC-AATGAAGGTGTGGGATTCCGCT 44780 | |||| |||| | |||| ||||||| | || | |||| || | | ||||||| Sbjct 66 GACGTGGACCTATAACCGCAGTAATGTGGT-GATGCCGGATGATGGCGCGCCGTTCCGCT 8 Query 44781 ACAGTTT 44787 |||| || Sbjct 7 ACAGCTT 1 >seq22751 Length=317 Score = 235 bits (260), Expect = 2e-57 Identities = 141/148 (95%), Gaps = 0/148 (0%) Strand=Plus/Plus Query 4900 GGGAGGTAAACGGGCATTTCAGCTCAAGGCCGTTACCGTCACTGCATAAACCATCGGGAG 4959 |||||||||||||| ||||||| ||||||||||| ||||||||||||||||||||||||| Sbjct 141 GGGAGGTAAACGGGTATTTCAGTTCAAGGCCGTTGCCGTCACTGCATAAACCATCGGGAG 200 Query 4960 AGCAGGCGGTGCGCATACTTTCGTCGCGATAGATGATCGGGGATTCAGTAACATTAACGC 5019 |||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||| Sbjct 201 AGCAGGCGGTACGCATACTTTCGTCGCGATAGATGATCGGGGATTCAGTAACATTCACGC 260 Query 5020 CGGAAGTGAACTCAAAGAGGGTTCTGGC 5047 |||||||||| ||||| ||||||||||| Sbjct 261 CGGAAGTGAATTCAAACAGGGTTCTGGC 288 >seq24591 Length=232 Score = 111 bits (122), Expect = 6e-20 Identities = 141/192 (73%), Gaps = 3/192 (2%) Strand=Plus/Minus Query 45401 GAAAAAGAAGCCATCGTGGATAACGGTGCCCGCTTTGA-GCCG--CAGTCAGGCACCCTG 45457 |||||||| ||||||||||||||||| || | |||||| | || ||| ||||| || Sbjct 232 GAAAAAGAGGCCATCGTGGATAACGGGGCGCACTTTGACGGCGAACAGAGTGGCACGGTG 173 Query 45458 AACAGCGTCATCCCTCCGGCAGTGCAGCACCTGACGGTGGAGGTGAGCGCAGCTGACGGC 45517 || | |||| || || || |||||||||||||| | || || | |||| ||| Sbjct 172 AATGGTGTCACGCCGCCAGCGGTGCAGCACCTGACCGCAGAAGTCACTGCAGACAGCGGG 113 Query 45518 CAGTATCTGGCGCAGGTGAAATGGGACACGCCGCGGGTGGTGAAGGGCGTGCGCTTCAGT 45577 | |||| || || || | ||||||||| ||| |||||||||||||||| | ||| Sbjct 112 GAATATCAGGTGCTGGCGCGATGGGACACACCGAAGGTGGTGAAGGGCGTGAGTTTCCTG 53 Query 45578 CTGCGCCTGACC 45589 || || |||||| Sbjct 52 CTCCGTCTGACC 41 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 185198170658240