Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Dirofilaria_20immitis_20[genbank_20GCA_5F001077395.1_202013-08-23]
25,560 sequences; 84,888,114 total letters
Query= NC_004813.1
Length=57930
Score E
Sequences producing significant alignments: (Bits) Value
seq25371 345 2e-90
seq24227 241 5e-59
seq22751 235 2e-57
seq24591 111 6e-20
>seq25371
Length=205
Score = 345 bits (382), Expect = 2e-90
Identities = 197/201 (98%), Gaps = 0/201 (0%)
Strand=Plus/Plus
Query 12868 GCTTTCCGGGAAAACGGGATCACCTCGATGGAACAGGTTAACGCAGGAATGCGCGTAGCC 12927
||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 5 GCTTTTCGGGAAAACGGGATCACCACGATGGAACAGGTTAACGCAGGAATGCGCGTAGCC 64
Query 12928 CGTCGGCAGAATCGACCATTTCTTCCATCACCCGGGCAGTTTGTTGCATGGTGCCGGGAA 12987
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 65 CGTCGGCAGAATCGACCATTTCTGCCATCACCCGGGCAGTTTGTTGCATGGTGCCGGGAA 124
Query 12988 GAAGCATCCGTTATCGCCGGACTGCCAAACGTCAGCGAGCTGGTTGATATGGTTTACGAG 13047
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 125 GAAGCATCCGTTACCGCCGGACTGCCAAACGTCAGCGAGCTGGTTGATATGGTTTACGAG 184
Query 13048 TATTGCCGGAAGCGAGGCCTG 13068
|||||||||||||||||||||
Sbjct 185 TATTGCCGGAAGCGAGGCCTG 205
>seq24227
Length=246
Score = 241 bits (266), Expect = 5e-59
Identities = 203/247 (82%), Gaps = 2/247 (1%)
Strand=Plus/Minus
Query 44542 CTGCGACCAGACGGTCCCGGATGGTTTCGGGGGCACAGAGCCGCGGATGACCTTTAATGC 44601
|||||||||| | || ||||| || || || ||||| |||||||| || |||| ||||||
Sbjct 246 CTGCGACCAGTCAGTGCCGGACGGCTTTGGCGGCACGGAGCCGCGCATCACCTGTAATGC 187
Query 44602 GTACCTGTCACAACAGCGTAAGGCGTGGGACGTTCTCAGTGATTTCTGCTCGGCGATGCG 44661
||||||| | |||||||||||||||||| || ||||| ||||||||||||||||||||
Sbjct 186 GTACCTGACCACACAGCGTAAGGCGTGGGATGTGCTCAGCGATTTCTGCTCGGCGATGCG 127
Query 44662 CTGTATGCCGGTATGGAACGGGCAGACGCTGACGTTTGTGCAGGACCGTCCGTCAGATGT 44721
|||||||||||||||||||||||||||||||||||| ||||||||||| ||||| |||
Sbjct 126 CTGTATGCCGGTATGGAACGGGCAGACGCTGACGTTCGTGCAGGACCGACCGTCGGATAA 67
Query 44722 GGTGTGGCCCTACACAAACAGTGATGTGGTGGCTGAC-AATGAAGGTGTGGGATTCCGCT 44780
| |||| |||| | |||| ||||||| | || | |||| || | | |||||||
Sbjct 66 GACGTGGACCTATAACCGCAGTAATGTGGT-GATGCCGGATGATGGCGCGCCGTTCCGCT 8
Query 44781 ACAGTTT 44787
|||| ||
Sbjct 7 ACAGCTT 1
>seq22751
Length=317
Score = 235 bits (260), Expect = 2e-57
Identities = 141/148 (95%), Gaps = 0/148 (0%)
Strand=Plus/Plus
Query 4900 GGGAGGTAAACGGGCATTTCAGCTCAAGGCCGTTACCGTCACTGCATAAACCATCGGGAG 4959
|||||||||||||| ||||||| ||||||||||| |||||||||||||||||||||||||
Sbjct 141 GGGAGGTAAACGGGTATTTCAGTTCAAGGCCGTTGCCGTCACTGCATAAACCATCGGGAG 200
Query 4960 AGCAGGCGGTGCGCATACTTTCGTCGCGATAGATGATCGGGGATTCAGTAACATTAACGC 5019
|||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 201 AGCAGGCGGTACGCATACTTTCGTCGCGATAGATGATCGGGGATTCAGTAACATTCACGC 260
Query 5020 CGGAAGTGAACTCAAAGAGGGTTCTGGC 5047
|||||||||| ||||| |||||||||||
Sbjct 261 CGGAAGTGAATTCAAACAGGGTTCTGGC 288
>seq24591
Length=232
Score = 111 bits (122), Expect = 6e-20
Identities = 141/192 (73%), Gaps = 3/192 (2%)
Strand=Plus/Minus
Query 45401 GAAAAAGAAGCCATCGTGGATAACGGTGCCCGCTTTGA-GCCG--CAGTCAGGCACCCTG 45457
|||||||| ||||||||||||||||| || | |||||| | || ||| ||||| ||
Sbjct 232 GAAAAAGAGGCCATCGTGGATAACGGGGCGCACTTTGACGGCGAACAGAGTGGCACGGTG 173
Query 45458 AACAGCGTCATCCCTCCGGCAGTGCAGCACCTGACGGTGGAGGTGAGCGCAGCTGACGGC 45517
|| | |||| || || || |||||||||||||| | || || | |||| |||
Sbjct 172 AATGGTGTCACGCCGCCAGCGGTGCAGCACCTGACCGCAGAAGTCACTGCAGACAGCGGG 113
Query 45518 CAGTATCTGGCGCAGGTGAAATGGGACACGCCGCGGGTGGTGAAGGGCGTGCGCTTCAGT 45577
| |||| || || || | ||||||||| ||| |||||||||||||||| | |||
Sbjct 112 GAATATCAGGTGCTGGCGCGATGGGACACACCGAAGGTGGTGAAGGGCGTGAGTTTCCTG 53
Query 45578 CTGCGCCTGACC 45589
|| || ||||||
Sbjct 52 CTCCGTCTGACC 41
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 185198170658240
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |