Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dirofilaria_20immitis_20[genbank_20GCA_5F001077395.1_202013-08-23] 25,560 sequences; 84,888,114 total letters Query= NC_005309.1 Length=359853 Score E Sequences producing significant alignments: (Bits) Value seq1448 131 4e-25 seq10840 114 3e-20 seq3028 107 4e-18 >seq1448 Length=39285 Score = 131 bits (144), Expect = 4e-25 Identities = 117/144 (81%), Gaps = 2/144 (1%) Strand=Plus/Minus Query 104420 CCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCT 104479 || |||||||| | | || ||||| |||||||| ||||| |||||||||||||| ||| Sbjct 34872 CCTGCAAAAATCAATCGTTGCTGATCTGGAGGTATGCCTTCCTTATCCTGAATCTTCGCT 34813 Query 104480 TTTACATTTTCTACGGTATCGCTAGG-TTCTACCTCTAGTGTAATAGTCTTACCAGTAAG 104538 ||||||||||| | ||||| | ||| ||| || || || ||||| ||||||||||| | Sbjct 34812 TTTACATTTTCAATAGTATC-CGAGGATTCGACTTCAAGCGTAATCGTCTTACCAGTTAA 34754 Query 104539 TGTTTTTACAAATATCTGCATTTT 104562 |||||||||||| || ||||| || Sbjct 34753 TGTTTTTACAAAAATTTGCATATT 34730 >seq10840 Length=643 Score = 114 bits (126), Expect = 3e-20 Identities = 111/143 (78%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 104417 TTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTT 104476 || || || ||||| || | ||||||||||| || || || || ||||| ||||| || Sbjct 143 TTACCTGCGAAAATAAGTCGTTGTTGATCAGGTGGAATGCCCTCCTTATCTTGAATTTTA 84 Query 104477 GCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTA 104536 ||||| ||||| || | |||||| | ||||||||| || ||||| || |||||||| Sbjct 83 GCTTTCACATTCTCAATGGTATCAGACGATTCTACCTCAAGAGTAATCGTTTTACCAGTT 24 Query 104537 AGTGTTTTTACAAATATCTGCAT 104559 |||||||| || ||||| ||||| Sbjct 23 AGTGTTTTCACGAATATTTGCAT 1 >seq3028 Length=62347 Score = 107 bits (118), Expect = 4e-18 Identities = 142/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 || ||||| |||||||||||||| || |||| || | ||| || || ||||| || || Sbjct 28120 GTCGATTCCTTCTGAATATTATAATCCGATAACGTACGACCATCCTCCAGTTGCTTCCCG 28179 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482 ||||| || || | |||||| || || || || || || || || || || |||||||| Sbjct 28180 GCAAAGATCAGTCGCTGTTGGTCTGGTGGAATACCCTCCTTGTCTTGGATTTTTGCTTTA 28239 Query 104483 ACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTT 104542 ||||| || | ||||| | ||| || || | || || || ||||| || | ||| Sbjct 28240 ACATTCTCGATCGTATCCGATGCTTCCACTTCCAACGTTATGGTTTTACCCGTCAAAGTT 28299 Query 104543 TTTACAAATATCTGCAT 104559 || || || || ||||| Sbjct 28300 TTCACGAAAATTTGCAT 28316 Score = 105 bits (116), Expect = 2e-17 Identities = 109/143 (76%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 104420 CCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCT 104479 ||||||||||| || | ||||||||| || || || ||||| || || || ||||||||| Sbjct 29605 CCAGCAAAAATCAGGCGCTGTTGATCCGGTGGAATACCTTCCTTGTCTTGTATCTTTGCT 29664 Query 104480 TTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGT 104539 || ||||| || | || || || ||| || ||||| ||||| || || || || | | Sbjct 29665 TTAACATTCTCAATCGTGTCTGAAGCTTCCACTTCTAGCGTAATTGTTTTTCCCGTCAAT 29724 Query 104540 GTTTTTACAAATATCTGCATTTT 104562 |||||||| || || ||||| || Sbjct 29725 GTTTTTACGAAGATTTGCATGTT 29747 Score = 100 bits (110), Expect = 7e-16 Identities = 106/140 (76%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 104420 CCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCT 104479 || |||||||| || | || ||||||||||| || || || || || ||||| || || Sbjct 28520 CCTGCAAAAATAAGGCGTTGCTGATCAGGAGGGATGCCCTCCTTGTCTTGAATTTTGGCC 28579 Query 104480 TTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGT 104539 |||||||| || | ||||| | |||||| || ||||| || || || ||||||||| Sbjct 28580 TTTACATTCTCGATAGTATCTGAGGCTTCTACTTCCAGTGTTATGGTTTTGCCAGTAAGT 28639 Query 104540 GTTTTTACAAATATCTGCAT 104559 || || || || |||||||| Sbjct 28640 GTCTTGACGAAAATCTGCAT 28659 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1151021331416480