Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Dirofilaria_20immitis_20[genbank_20GCA_5F001077395.1_202013-08-23]
25,560 sequences; 84,888,114 total letters
Query= NC_005309.1
Length=359853
Score E
Sequences producing significant alignments: (Bits) Value
seq1448 131 4e-25
seq10840 114 3e-20
seq3028 107 4e-18
>seq1448
Length=39285
Score = 131 bits (144), Expect = 4e-25
Identities = 117/144 (81%), Gaps = 2/144 (1%)
Strand=Plus/Minus
Query 104420 CCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCT 104479
|| |||||||| | | || ||||| |||||||| ||||| |||||||||||||| |||
Sbjct 34872 CCTGCAAAAATCAATCGTTGCTGATCTGGAGGTATGCCTTCCTTATCCTGAATCTTCGCT 34813
Query 104480 TTTACATTTTCTACGGTATCGCTAGG-TTCTACCTCTAGTGTAATAGTCTTACCAGTAAG 104538
||||||||||| | ||||| | ||| ||| || || || ||||| ||||||||||| |
Sbjct 34812 TTTACATTTTCAATAGTATC-CGAGGATTCGACTTCAAGCGTAATCGTCTTACCAGTTAA 34754
Query 104539 TGTTTTTACAAATATCTGCATTTT 104562
|||||||||||| || ||||| ||
Sbjct 34753 TGTTTTTACAAAAATTTGCATATT 34730
>seq10840
Length=643
Score = 114 bits (126), Expect = 3e-20
Identities = 111/143 (78%), Gaps = 0/143 (0%)
Strand=Plus/Minus
Query 104417 TTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTT 104476
|| || || ||||| || | ||||||||||| || || || || ||||| ||||| ||
Sbjct 143 TTACCTGCGAAAATAAGTCGTTGTTGATCAGGTGGAATGCCCTCCTTATCTTGAATTTTA 84
Query 104477 GCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTA 104536
||||| ||||| || | |||||| | ||||||||| || ||||| || ||||||||
Sbjct 83 GCTTTCACATTCTCAATGGTATCAGACGATTCTACCTCAAGAGTAATCGTTTTACCAGTT 24
Query 104537 AGTGTTTTTACAAATATCTGCAT 104559
|||||||| || ||||| |||||
Sbjct 23 AGTGTTTTCACGAATATTTGCAT 1
>seq3028
Length=62347
Score = 107 bits (118), Expect = 4e-18
Identities = 142/197 (72%), Gaps = 0/197 (0%)
Strand=Plus/Plus
Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422
|| ||||| |||||||||||||| || |||| || | ||| || || ||||| || ||
Sbjct 28120 GTCGATTCCTTCTGAATATTATAATCCGATAACGTACGACCATCCTCCAGTTGCTTCCCG 28179
Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482
||||| || || | |||||| || || || || || || || || || || ||||||||
Sbjct 28180 GCAAAGATCAGTCGCTGTTGGTCTGGTGGAATACCCTCCTTGTCTTGGATTTTTGCTTTA 28239
Query 104483 ACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTT 104542
||||| || | ||||| | ||| || || | || || || ||||| || | |||
Sbjct 28240 ACATTCTCGATCGTATCCGATGCTTCCACTTCCAACGTTATGGTTTTACCCGTCAAAGTT 28299
Query 104543 TTTACAAATATCTGCAT 104559
|| || || || |||||
Sbjct 28300 TTCACGAAAATTTGCAT 28316
Score = 105 bits (116), Expect = 2e-17
Identities = 109/143 (76%), Gaps = 0/143 (0%)
Strand=Plus/Plus
Query 104420 CCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCT 104479
||||||||||| || | ||||||||| || || || ||||| || || || |||||||||
Sbjct 29605 CCAGCAAAAATCAGGCGCTGTTGATCCGGTGGAATACCTTCCTTGTCTTGTATCTTTGCT 29664
Query 104480 TTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGT 104539
|| ||||| || | || || || ||| || ||||| ||||| || || || || | |
Sbjct 29665 TTAACATTCTCAATCGTGTCTGAAGCTTCCACTTCTAGCGTAATTGTTTTTCCCGTCAAT 29724
Query 104540 GTTTTTACAAATATCTGCATTTT 104562
|||||||| || || ||||| ||
Sbjct 29725 GTTTTTACGAAGATTTGCATGTT 29747
Score = 100 bits (110), Expect = 7e-16
Identities = 106/140 (76%), Gaps = 0/140 (0%)
Strand=Plus/Plus
Query 104420 CCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCT 104479
|| |||||||| || | || ||||||||||| || || || || || ||||| || ||
Sbjct 28520 CCTGCAAAAATAAGGCGTTGCTGATCAGGAGGGATGCCCTCCTTGTCTTGAATTTTGGCC 28579
Query 104480 TTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGT 104539
|||||||| || | ||||| | |||||| || ||||| || || || |||||||||
Sbjct 28580 TTTACATTCTCGATAGTATCTGAGGCTTCTACTTCCAGTGTTATGGTTTTGCCAGTAAGT 28639
Query 104540 GTTTTTACAAATATCTGCAT 104559
|| || || || ||||||||
Sbjct 28640 GTCTTGACGAAAATCTGCAT 28659
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1151021331416480
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |