Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Dirofilaria_20immitis_20[genbank_20GCA_5F001077395.1_202013-08-23]
25,560 sequences; 84,888,114 total letters
Query= NC_006639.1
Length=24748
Score E
Sequences producing significant alignments: (Bits) Value
seq4005 140 5e-29
seq6565 122 1e-23
seq225 96.9 5e-16
>seq4005
Length=26775
Score = 140 bits (154), Expect = 5e-29
Identities = 187/260 (72%), Gaps = 0/260 (0%)
Strand=Plus/Plus
Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492
|| ||||||||||| | | ||| || || || ||||| || || || || || || ||
Sbjct 21049 GCGAAGCGTCATCGTAAAGTTCTACGCGACAATATCCAGGGTATAACGAAACCGGCAATT 21108
Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552
|| ||| ||||||| |||||||| || || ||| |||| || | |||| || || |
Sbjct 21109 CGACGTTTGGCTCGACGTGGTGGCGTAAAACGTATCTCCGGGCTAATCTACGAGGAAACG 21168
Query 16553 CGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAG 16612
|||| || | ||| | || || | | ||| || | ||||||| || ||| |||
Sbjct 21169 CGTGGCGTGCTAAAGGTGTTTCTGGAAAACGTCATTCGTGATGCTGTCACATATTGCGAA 21228
Query 16613 CACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGC 16672
||||| || || || ||||| || | |||||| |||||||||| ||||||||||| ||
Sbjct 21229 CACGCAAAGCGGAAAACTGTTACGGCAATGGATGTCGTCTATGCTTTGAAACGTCAGGGG 21288
Query 16673 CGTAAGATTTATGGTTTTGG 16692
|||| | ||||| |||||
Sbjct 21289 CGTACACTGTATGGCTTTGG 21308
>seq6565
Length=20894
Score = 122 bits (134), Expect = 1e-23
Identities = 185/261 (71%), Gaps = 2/261 (1%)
Strand=Plus/Plus
Query 16433 GCTAAGCGTCATCGCAGATCTCTT-CGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491
|| || |||||||| | | | || || || || |||||||| || || || || || ||
Sbjct 2776 GCGAAACGTCATCGGA-AGGTGTTGCGTGACAATATCCAAGGGATTACAAAACCGGCAAT 2834
Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551
|| || | || |||||||||||||| || ||| |||| |||||| |||||||||| |
Sbjct 2835 TCGACGATTAGCACGTCGTGGTGGAGTGAAACGTATCTCGGGATTGATCTATGAAGAAAC 2894
Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611
|||| || ||||| | || ||| | | || || | ||||| | ||| ||
Sbjct 2895 ACGTGGAGTGCTGAAGGTGTTTCTCGAAAATGTGATACGCGATGCGGTAACATATTGTGA 2954
Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671
|| || |||||||| || || || ||||||| | || ||||| |||||||| |||||
Sbjct 2955 ACATGCAAAACGTAAAACGGTAACTGCCATGGACGTAGTATATGCGTTGAAACGACAAGG 3014
Query 16672 CCGTAAGATTTATGGTTTTGG 16692
|| | | ||||| |||||
Sbjct 3015 TCGAACACTCTATGGATTTGG 3035
>seq225
Length=105650
Score = 96.9 bits (106), Expect = 5e-16
Identities = 91/116 (78%), Gaps = 0/116 (0%)
Strand=Plus/Minus
Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492
||||| || ||||||| | ||| || ||||| || ||||| || || |||||||||||
Sbjct 90096 GCTAAACGGCATCGCAAAGTTCTACGTGATAATATTCAAGGTATAACGAAGCCAGCTATT 90037
Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGA 16548
|||||| |||| ||||||||||| || ||||| |||| || | | ||||||||
Sbjct 90036 CGTCGTTTGGCACGTCGTGGTGGCGTAAAGCGAATCTCGGGTCTCATTTATGAAGA 89981
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 79051830313080
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |