Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dirofilaria_20immitis_20[genbank_20GCA_5F001077395.1_202013-08-23] 25,560 sequences; 84,888,114 total letters Query= NC_006639.1 Length=24748 Score E Sequences producing significant alignments: (Bits) Value seq4005 140 5e-29 seq6565 122 1e-23 seq225 96.9 5e-16 >seq4005 Length=26775 Score = 140 bits (154), Expect = 5e-29 Identities = 187/260 (72%), Gaps = 0/260 (0%) Strand=Plus/Plus Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492 || ||||||||||| | | ||| || || || ||||| || || || || || || || Sbjct 21049 GCGAAGCGTCATCGTAAAGTTCTACGCGACAATATCCAGGGTATAACGAAACCGGCAATT 21108 Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552 || ||| ||||||| |||||||| || || ||| |||| || | |||| || || | Sbjct 21109 CGACGTTTGGCTCGACGTGGTGGCGTAAAACGTATCTCCGGGCTAATCTACGAGGAAACG 21168 Query 16553 CGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAG 16612 |||| || | ||| | || || | | ||| || | ||||||| || ||| ||| Sbjct 21169 CGTGGCGTGCTAAAGGTGTTTCTGGAAAACGTCATTCGTGATGCTGTCACATATTGCGAA 21228 Query 16613 CACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGC 16672 ||||| || || || ||||| || | |||||| |||||||||| ||||||||||| || Sbjct 21229 CACGCAAAGCGGAAAACTGTTACGGCAATGGATGTCGTCTATGCTTTGAAACGTCAGGGG 21288 Query 16673 CGTAAGATTTATGGTTTTGG 16692 |||| | ||||| ||||| Sbjct 21289 CGTACACTGTATGGCTTTGG 21308 >seq6565 Length=20894 Score = 122 bits (134), Expect = 1e-23 Identities = 185/261 (71%), Gaps = 2/261 (1%) Strand=Plus/Plus Query 16433 GCTAAGCGTCATCGCAGATCTCTT-CGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 || || |||||||| | | | || || || || |||||||| || || || || || || Sbjct 2776 GCGAAACGTCATCGGA-AGGTGTTGCGTGACAATATCCAAGGGATTACAAAACCGGCAAT 2834 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 || || | || |||||||||||||| || ||| |||| |||||| |||||||||| | Sbjct 2835 TCGACGATTAGCACGTCGTGGTGGAGTGAAACGTATCTCGGGATTGATCTATGAAGAAAC 2894 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 |||| || ||||| | || ||| | | || || | ||||| | ||| || Sbjct 2895 ACGTGGAGTGCTGAAGGTGTTTCTCGAAAATGTGATACGCGATGCGGTAACATATTGTGA 2954 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 || || |||||||| || || || ||||||| | || ||||| |||||||| ||||| Sbjct 2955 ACATGCAAAACGTAAAACGGTAACTGCCATGGACGTAGTATATGCGTTGAAACGACAAGG 3014 Query 16672 CCGTAAGATTTATGGTTTTGG 16692 || | | ||||| ||||| Sbjct 3015 TCGAACACTCTATGGATTTGG 3035 >seq225 Length=105650 Score = 96.9 bits (106), Expect = 5e-16 Identities = 91/116 (78%), Gaps = 0/116 (0%) Strand=Plus/Minus Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492 ||||| || ||||||| | ||| || ||||| || ||||| || || ||||||||||| Sbjct 90096 GCTAAACGGCATCGCAAAGTTCTACGTGATAATATTCAAGGTATAACGAAGCCAGCTATT 90037 Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGA 16548 |||||| |||| ||||||||||| || ||||| |||| || | | |||||||| Sbjct 90036 CGTCGTTTGGCACGTCGTGGTGGCGTAAAGCGAATCTCGGGTCTCATTTATGAAGA 89981 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 79051830313080