Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dirofilaria_20immitis_20[genbank_20GCA_5F001077395.1_202013-08-23] 25,560 sequences; 84,888,114 total letters Query= NC_008293.1 Length=135454 Score E Sequences producing significant alignments: (Bits) Value seq3028 132 4e-26 >seq3028 Length=62347 Score = 132 bits (146), Expect = 4e-26 Identities = 160/215 (74%), Gaps = 6/215 (3%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 |||||||| || || || |||||||| |||||| |||| || | |||||||| | || Sbjct 28316 ATGCAAATTTTCGTGAAAACTTTGACGGGTAAAACCATAACGTTGGAAGTGGAAGCATCG 28257 Query 25059 GACACTATCGAGTCACTG---AAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGAC 25115 || || |||||| | || ||||||||| || ||||| || || |||||||| ||| Sbjct 28256 GATACGATCGAG--AATGTTAAAGCAAAAATCCAA-GACAAGGAGGGTATTCCACCAGAC 28200 Query 25116 CAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTAC 25175 |||||||| | || |||||||| || ||| | || |||| ||| || | ||||| Sbjct 28199 CAACAGCGACTGATCTTTGCCGGGAAGCAACTGGAGGATGGTCGTACGTTATCGGATTAT 28140 Query 25176 AATATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 |||||||| || ||||| ||||| || || || || Sbjct 28139 AATATTCAGAAGGAATCGACGCTTCACTTGGTTCT 28105 Score = 98.7 bits (108), Expect = 9e-16 Identities = 111/146 (76%), Gaps = 6/146 (4%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 |||||||| ||||| || ||| | |||||||| | |||||| | |||||||| | ||| Sbjct 29369 ATGCAAATTTTTGTGAAAACTCTTACCGGTAAGACAATCACATTGGAAGTGGAAGCATCT 29310 Query 25059 GACACTATCGAGTCACTG---AAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGAC 25115 ||||| |||||| | || |||| |||| || ||||||||||| |||||||| || Sbjct 29309 GACACCATCGAG--AATGTTAAAGCGAAAATCCAG-GACAAAGAAGGCATTCCACCAGAT 29253 Query 25116 CAACAGCGGATTATTTTTGCCGGCAA 25141 || || ||| | ||||| || || || Sbjct 29252 CAGCAACGGTTGATTTTCGCTGGTAA 29227 Score = 82.4 bits (90), Expect = 7e-11 Identities = 71/88 (81%), Gaps = 0/88 (0%) Strand=Plus/Minus Query 25123 GGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAATATTC 25182 ||||||||||| | || || ||||||||||||| ||||||| | |||||| ||||| | Sbjct 29073 GGATTATTTTTACAGGGAAGCAATTAGAAGATGGTCGCACTTTATCCGATTATAATATCC 29014 Query 25183 AAAAAGAATCCACGCTACATTTAGTGCT 25210 | ||||| ||||| || ||| | ||||| Sbjct 29013 AGAAAGAGTCCACACTCCATCTGGTGCT 28986 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433193012911400